Gene detail

Detail information of GWHGAAEX006958/evm.TU.scaffold_191.44_evm.TU.scaffold_191.46

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2321	WD40 repeat protein
nr	gi\|672161938\|ref\|XP_008800797.1\|	PREDICTED: LOW QUALITY PROTEIN: nucleolar protein 10 [Phoenix dactylifera]
trEMBL	tr\|D7TIN5\|D7TIN5_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30111.3}
TAIR	AT3G56990	embryo sac development arrest 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000194	1425454	1517345	+

Transcript Sequence
>GWHTAAEX006958 GCCTATTCCAATTATGCCCTTTAAACCCTCAACGAATACTCAATCAGTGCCCCGACGACATCCATCAGCCCACTCCAGCCGCTTCCGCGCACCGTCTCCACCATTGCCACGCCGGACATCGAGTCCTAGTATAGTCCTATTTTTGTTTATCTAAGCACCTCTTTCCTCGTGAGATTGATCTTCAAAACTGAGCTCGAGCGCGACGAGTCTCGATCGCTACTAAGCAACCCCATAACTCCCGATTGAGACAATCCTAAACAGTGTATTCGAACCCAACGGCATCTCTATGTTCTTAAAGCCTCTTGCGCTGATCATCTCTTAATCATTTGGTAAATCGTGTATAGAAATACAAAACAGAGCAAATATCGATATTTTCCATCTGTGGTCCTTGTTGTTGGATATATGACGACGGTAGGGAGTATTAAATCCACCTCCTTAAACGGGGTTAAAATTTACTCTGTTTCCGGCCAGCGTTCTTTGCCCTCATGGCTCCCCCCCAAGAAGCTCAAAGCCCTCCGCAAAGACAATGAGTACCTCCGAAGAGTTGATTTGATCCAAGACTTAAAATTTGAAACTGCAACAACCAAAATTAAGGTTACCTCAGATGGAGAATACTTAATTTCATCAGGTATTTATCCTCCACAAGTAAAAGTTTTTGAGTTACGAGAAATGTCAATGAAGTTTGAAAGGCATTTGGTTTCTGAAGTAATTAACTTTGAGGTGCTCGGTGATGATTACTCCAAAATTGCTTTTCTCTGTGCTGATCGCTCAATATGCTTGCACGCCAAGTATGGAAGTCACTACAGCTTGCGAATTCCAAGAATGGGAAGGGATATGAAGTATGACAGCTGGTCCTGTGACTTGCTTTGTGCTGCCTCCTCACCAGAATTATACAGAATCAACTTGGAACAGGGCCGTTTTTTGTCATCAATCACGTCTCAATCACCAGCTATCAATGCAGTTAGTCGCAGCATGATTCATGGTCTTGTGGCTTGTGGTGGTGAGGATGGATTTGTTGAATGCTTTGACATGAGAAAGAAATCTTCGGTTGGCAGAATTAATGCTGTTGCGCAATCTGGTGATTTTCATCAGGAGATAACCTCCATGCGTTTTGATGACGACCATGGGTTCCTGATGGTAGTTGGGAACAGTGCTGGGAAGATATCTATATATGACTTACGCATGCCTGAGCCAATTCGAATCAAAGATCATATGTATGGAAGACCAATAATAGACATCAAATGGCATCAGACTCTTAATTCTGCAGACCCTAAATTGATCAGTACTGATAGTCATGTTGTTCGAGTTTGGGATCCTAACACGGGGGATAATTTGATTAATATAGAACCAAGTGATGGTATCATCAATGATGTTTGTGTGTTCCATGAAAGTGGCTTGATGTTATTGGCATTGGATGGTAGCCATATACCCGCTTACTTCATTCCAAATTTAGGGCCTGCTCCCAAGTGGTGTTCGTACTTGGAAAATCTTACAGAGGAGATGGAGGAGGGATCACAAGCTACTATTTATGATGATTATAAATTTTTAACCAAGGAAGACCTTGAGAAGCTGCATTTGACAAATTTAATTGGCACTAACCTGTTAAGAGCATATATGCACGGTTTTTTTATCGACTATCGATTATTCAAAAAGGCCCAAGCTGTTGCAAATCCATTTGCATATGAAACTTATATAGAGAAGAAGAAACAAGAAAAGATAGAGGCTGAACGTGCTTCTCGCATTTCGATTAAAAGAAAGTTGCCCAAAGTAAACCGTTTACTTGCTGCTAGGCTTCTTAAAAATGAAGAGGTAGATGGTGAAGTAGGAGTTGAAGATGACCCTAATGTCATAAAGAAATTGTCAAAGAAAAATAGGGGCCTGACGAGTGAGATTTTGAAGGATGAGCGTTTTACAGCAATGTTTGAGAATAAGGACTTTGAAGTTGATGAGTTATCACGTGAATATCTCTTGCTTCACCCCCAATCTACCAAGACAAATTCTCCTCTGATTGAAGAATACTTTGACCCAGTACTGGAGGATGATGAGGTGGGCCCCAGCAATTCCGATGCTTCAGAGTCCTCTCAATCATTAGAAGAGGCCTCTAACGAGGACAGCAAGCGCCAGAAAAATCAAAAGCGTGTGAGGCTATACGAAGTGAAGGATGAGCGACATGCAGAAGCGTTTTGGAGCGGGGTGTCCCTCGCAAGGGACGACGCCCTTTCCCTGGGTGAGAGGGTGGAGGCGCTCGAGAGGAAGTCCTCCACCGCGGGTCCAGGTGGCGTCAAGGTGGGACAGGGCGGCTCTCGAGAAATTTCCTTTTCCTCCAAGAGTTCAAAGAAGCGGAACATGGACGAGAGCAGCCTTGCCGGGAAGAGAAGGGGCGTCCAACCACTCGGGTTGAAGCCGAGCAAGGCAGAGTTCTACGGCCGAAAACGGAGGGGCGGCCATTCCCGAAGCCGGTGAAGTTCAGTGGTTATTATTCAATAGTTTATATTATGCTTCTTTATCTTTTGCAAGTGTAACACACAAAATCTGTGTTTTATCTAACTTCTAAAACTTAATATTTACAAAAATGCCATATAATCTTATTCTTTTCTCTATTAAAATGCTATGTAATATGCTGATTTTGATGTAATACAAGATATTTTGATGGAAATTTTGGTGCTGAAAAAGTAAATCAGCAAGATTTGTTTTCTTGAAGTTGGGTGAATGGGTCTGATGTTTTAATGTAGTTATCGAGATATTCATTACTGT

Network for GWHGAAEX006958

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08159.11	NUC153	500	526	1.90E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.130
SRP064423	SRR2545915	Juvenile tuber	25.040
SRP108465	SRR5643513	five period of Gastrodia elata	17.730
	SRR5643514	five period of Gastrodia elata	19.190
	SRR5643515	five period of Gastrodia elata	17.380
	SRR5643524	five period of Gastrodia elata	17.480
	SRR5643525	five period of Gastrodia elata	18.900
	SRR5643528	five period of Gastrodia elata	16.700
	SRR5643658	five period of Gastrodia elata	18.250
	SRR5643659	five period of Gastrodia elata	22.580
	SRR5643660	five period of Gastrodia elata	22.190
	SRR5643661	five period of Gastrodia elata	20.170
	SRR5643662	five period of Gastrodia elata	19.910
	SRR5643663	five period of Gastrodia elata	19.300
	SRR5643664	five period of Gastrodia elata	20.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.690
SRP279888	Gastro	Gastrodia elata tuber	24.21
	Juven	Juvenile tuber	31.24
	Mother_Gastro	Mother tuber of Gastrodia elata	21.82
	Mother_Juven	Mother tuber of Juvenile	18.40