Detail information of GWHGAAEX006975/evm.TU.scaffold_192.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|3.00E-24RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01183.00E-22FOG: RRM domain
nrgi|743780934|ref|XP_010920676.1|2.38E-38PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Elaeis guineensis]
Swissprottr|Q9SVM8|RBG2_ARATH1.00E-22Glycine-rich RNA-binding protein 2, mitochondrial (Precursor)
trEMBLtr|I1HVS8|I1HVS8_BRADI2.00E-37Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G62460.4}
TAIRAT4G138503.00E-22glycine-rich RNA-binding protein 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018710561391069621+
Transcript Sequence

Network for GWHGAAEX006975

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_129991.40E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.350
SRR2545915Juvenile tuber7.940
SRP108465SRR5643513five period of Gastrodia elata5.900
SRR5643514five period of Gastrodia elata4.610
SRR5643515five period of Gastrodia elata5.420
SRR5643524five period of Gastrodia elata6.290
SRR5643525five period of Gastrodia elata0.170
SRR5643528five period of Gastrodia elata1.120
SRR5643658five period of Gastrodia elata1.170
SRR5643659five period of Gastrodia elata5.510
SRR5643660five period of Gastrodia elata4.040
SRR5643661five period of Gastrodia elata6.580
SRR5643662five period of Gastrodia elata2.370
SRR5643663five period of Gastrodia elata2.800
SRR5643664five period of Gastrodia elata2.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.390
SRR6049655Rhizomagastrodiae_C368-T10_good_12.090
SRR6049656Rhizomagastrodiae_C368-T07_good_15.280
SRR6049657Rhizomagastrodiae_C368-T07_good_15.160
SRR6049658Rhizomagastrodiae_C368-T04_good_14.260
SRR6049659Rhizomagastrodiae_C368-T04_good_12.770
SRR6049660Rhizomagastrodiae_C368-T01_good_14.480
SRR6049661Rhizomagastrodiae_C368-T04_good_14.090
SRR6049662Rhizomagastrodiae_C368-T01_good_17.560
SRR6049663Rhizomagastrodiae_C368-T01_good_16.400
SRR6049664Rhizomagastrodiae_C368-T10_good_14.840
SRR6049665Rhizomagastrodiae_C368-T10_good_14.840
SRP279888GastroGastrodia elata tuber 5.84
JuvenJuvenile tuber1.93
Mother_GastroMother tuber of Gastrodia elata 2.31
Mother_JuvenMother tuber of Juvenile 1.14