Detail information of GWHGAAEX006976/evm.TU.scaffold_192.31


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|146328793|ref|YP_001209360.1|2.00E-15RNA recognition motif-containing protein [Dichelobacter nodosus VCS1703A]
nrgi|514813405|ref|XP_004981486.1|3.28E-27PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Setaria italica]
Swissprottr|Q9SVM8|RBG2_ARATH2.00E-15Glycine-rich RNA-binding protein 2, mitochondrial (Precursor)
trEMBLtr|K4AH03|K4AH03_SETIT1.00E-27Uncharacterized protein {ECO:0000313|EnsemblPlants:Si038160m}
TAIRAT3G460202.00E-20RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018710794771094722-
Transcript Sequence

Network for GWHGAAEX006976

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_124892.70E-23
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.480
SRR2545915Juvenile tuber17.870
SRP108465SRR5643513five period of Gastrodia elata15.980
SRR5643514five period of Gastrodia elata14.080
SRR5643515five period of Gastrodia elata16.530
SRR5643524five period of Gastrodia elata16.260
SRR5643525five period of Gastrodia elata5.850
SRR5643528five period of Gastrodia elata7.760
SRR5643658five period of Gastrodia elata6.580
SRR5643659five period of Gastrodia elata19.420
SRR5643660five period of Gastrodia elata17.510
SRR5643661five period of Gastrodia elata14.190
SRR5643662five period of Gastrodia elata16.790
SRR5643663five period of Gastrodia elata20.270
SRR5643664five period of Gastrodia elata14.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.530
SRR6049655Rhizomagastrodiae_C368-T10_good_14.240
SRR6049656Rhizomagastrodiae_C368-T07_good_110.810
SRR6049657Rhizomagastrodiae_C368-T07_good_18.570
SRR6049658Rhizomagastrodiae_C368-T04_good_14.510
SRR6049659Rhizomagastrodiae_C368-T04_good_16.890
SRR6049660Rhizomagastrodiae_C368-T01_good_18.220
SRR6049661Rhizomagastrodiae_C368-T04_good_16.820
SRR6049662Rhizomagastrodiae_C368-T01_good_110.140
SRR6049663Rhizomagastrodiae_C368-T01_good_19.690
SRR6049664Rhizomagastrodiae_C368-T10_good_19.770
SRR6049665Rhizomagastrodiae_C368-T10_good_19.770
SRP279888GastroGastrodia elata tuber 16.69
JuvenJuvenile tuber13.72
Mother_GastroMother tuber of Gastrodia elata 6.48
Mother_JuvenMother tuber of Juvenile 7.27