Detail information of GWHGAAEX006978/evm.TU.scaffold_192.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108759375|ref|YP_633320.1| | 1.00E-96 | ABC transporter permease [Myxococcus xanthus DK 1622] |
| KOG | KOG0055 | 0 | Multidrug/pheromone exporter, ABC superfamily |
| nr | gi|672110328|ref|XP_008794734.1| | 0 | PREDICTED: ABC transporter B family member 20-like [Phoenix dactylifera] |
| Swissprot | tr|Q9M3B9|AB20B_ARATH | 0 | ABC transporter B family member 20 |
| trEMBL | tr|M5X7S3|M5X7S3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ22117.1} |
| TAIR | AT3G55320 | 0 | P-glycoprotein 20 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000187 | 1243203 | 1260534 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006978
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00664.22 | ABC_membrane | 82 | 355 | 7.70E-46 |
| PF00005.26 | ABC_tran | 426 | 570 | 4.00E-24 |
| PF00664.22 | ABC_membrane | 837 | 1101 | 7.40E-39 |
| PF00005.26 | ABC_tran | 1173 | 1320 | 9.90E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05658 | ABCB1, CD243 | ABC transporters | map02010 |
| Bile secretion | map04976 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016887 | Molecular Function | ATPase activity |
| GO:0042626 | Molecular Function | ATPase activity, coupled to transmembrane movement of substances |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.630 |
| SRR2545915 | Juvenile tuber | 20.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.180 |
| SRR5643514 | five period of Gastrodia elata | 19.160 | |
| SRR5643515 | five period of Gastrodia elata | 21.650 | |
| SRR5643524 | five period of Gastrodia elata | 19.760 | |
| SRR5643525 | five period of Gastrodia elata | 25.450 | |
| SRR5643528 | five period of Gastrodia elata | 34.420 | |
| SRR5643658 | five period of Gastrodia elata | 25.230 | |
| SRR5643659 | five period of Gastrodia elata | 19.190 | |
| SRR5643660 | five period of Gastrodia elata | 20.350 | |
| SRR5643661 | five period of Gastrodia elata | 21.050 | |
| SRR5643662 | five period of Gastrodia elata | 22.670 | |
| SRR5643663 | five period of Gastrodia elata | 20.350 | |
| SRR5643664 | five period of Gastrodia elata | 22.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.67 |
| Juven | Juvenile tuber | 45.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 62.21 | |
| Mother_Juven | Mother tuber of Juvenile | 68.41 |