Detail information of GWHGAAEX006988/evm.TU.scaffold_193.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01703.00E-60E3 ubiquitin protein ligase
nrgi|743787826|ref|XP_010922508.1|1.16E-77PREDICTED: E3 ubiquitin-protein ligase UPL4 [Elaeis guineensis]
Swissprottr|Q9LYZ7|UPL4_ARATH2.00E-59E3 ubiquitin-protein ligase UPL4
trEMBLtr|Q60EQ3|Q60EQ3_ORYSJ3.00E-74Putative uncharacterized protein OJ1280_A04.10 {ECO:0000313|EMBL:AAU90179.1}
TAIRAT5G02880_23.00E-60Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000204121283134450-
Transcript Sequence

Network for GWHGAAEX006988

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00632.24HECT61444.50E-46
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyHECT

KEGG pathway

KO Enzyme pathway mapID
K10590TRIP12 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName
GO:0004842Molecular Functionubiquitin-protein transferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.330
SRR2545915Juvenile tuber18.970
SRP108465SRR5643513five period of Gastrodia elata17.320
SRR5643514five period of Gastrodia elata14.760
SRR5643515five period of Gastrodia elata16.900
SRR5643524five period of Gastrodia elata18.650
SRR5643525five period of Gastrodia elata34.410
SRR5643528five period of Gastrodia elata34.810
SRR5643658five period of Gastrodia elata35.260
SRR5643659five period of Gastrodia elata17.990
SRR5643660five period of Gastrodia elata23.310
SRR5643661five period of Gastrodia elata21.600
SRR5643662five period of Gastrodia elata19.370
SRR5643663five period of Gastrodia elata18.080
SRR5643664five period of Gastrodia elata20.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.430
SRR6049655Rhizomagastrodiae_C368-T10_good_113.020
SRR6049656Rhizomagastrodiae_C368-T07_good_119.050
SRR6049657Rhizomagastrodiae_C368-T07_good_120.640
SRR6049658Rhizomagastrodiae_C368-T04_good_126.060
SRR6049659Rhizomagastrodiae_C368-T04_good_127.970
SRR6049660Rhizomagastrodiae_C368-T01_good_120.790
SRR6049661Rhizomagastrodiae_C368-T04_good_124.390
SRR6049662Rhizomagastrodiae_C368-T01_good_113.190
SRR6049663Rhizomagastrodiae_C368-T01_good_117.390
SRR6049664Rhizomagastrodiae_C368-T10_good_113.660
SRR6049665Rhizomagastrodiae_C368-T10_good_113.660
SRP279888GastroGastrodia elata tuber 35.58
JuvenJuvenile tuber33.32
Mother_GastroMother tuber of Gastrodia elata 65.68
Mother_JuvenMother tuber of Juvenile 41.18