Gene detail

Detail information of GWHGAAEX006989/evm.TU.scaffold_193.8

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0168	Putative ubiquitin fusion degradation protein
nr	gi\|743787826\|ref\|XP_010922508.1\|	PREDICTED: E3 ubiquitin-protein ligase UPL4 [Elaeis guineensis]
Swissprot	tr\|Q9LYZ7\|UPL4_ARATH	E3 ubiquitin-protein ligase UPL4
trEMBL	tr\|M0SYE5\|M0SYE5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P14160_001}
TAIR	AT5G02880_1	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000204	143812	171377	-

Transcript Sequence
>GWHTAAEX006989 ATGGATAGGGGTCGCAAGCGCCCCGAGATCGCCGATCAGTTGCCCGCCGATAAGCGAGCGTGCAGCTCCTCCGAGTTCCGCCCTGCTGCCCCCGATGCTGCCGCCGCAGGCTCGTCTTCGTCCTCCTCCTCTCTTCCGCCTCCTTCATCTTCCGAGCTTCCGGACTGTGACATGGAGTCCTCGTCCTCTGGCCGCGGAGGCGGAGATTCGGCGTACGGCTCCTGTGAATCTGACGACGACCCTCATCATCACCAGCCTCGAATGGGATGCGGTGCCAGCAGGGAAAAGTTTCAGAGGATGCTCTCAGTTCTCAATGCCGACGACGCCGGGCCATCGGCGCAGCTTGCGTCACTGACCGAGCTTTGCGAGGAGCTGTCGTTTTGCGTGGAGGATTCCTTGGGTTACTTCCCCATGGACAGCGCCTTGCCTTCGCTCGTGAGGCTCGCGGGAAGTGAAGGCGATCCGGACATCATGCTCCTGGCAATCCGGGCGATTACTTACTTGTGCGATGTAATACCGAGGTCGGCGGATGCCGCCGTGCGGCACGGAGCGTTGCCGGTTCTTTGTGATCGGCTGCTGTCCATCGAGTACTTGGACGTGGCTGAGCAGTCCTTGCAAGCATTGGAGAAGATATCTCGGAAACAACCGGTGCCCTGCTTAAAAGCAGGGGCAGTAATGGCGGTCTTGGGTTTCATGGACTTTTTCTCCACAAGTGTGCAGAGACTGGCTTTATCCACAGTTGCAAATGTGTGCAAGAAGCTTCCTTCCGATTGTTCTTATGTCGTCCTTGAGGTTGTTCCTACATTGTGCAATATTCTGCAATATGAAGACAGCAAGCTTGTAGAAACAGCTGTTACGTGCTTGATAAGGATAACTGACTGTTTCAGTAATTCTAGTGAGATACTTGATGAGCTTTGCAAGCATGGGATGATTGGTAACTCTTTGCATTTGATAACTGTTGATGGCCGGACAACACTTAGTCAAACTGCTTTTGTGGGCTTGATTGGGCTTCTAACAAAACTGGCCACTGATTCTCCTGTAGCTATCAGAACTCTTTTTGAACTGGGTGTGAGTAGCAGTTTGAAGCGAATTTTGATAGCTTCCGGAGTCTCTTATGGGACTAGTCACTCTTATCCTGAAGGTGTTTATTGCAATCAGCAGGTTTATGAAGTCTTGAAATTGTTAAATCAGATGATGCCATCTGAAGCACGGGATGATGGGAAGATTCAGCTAGTTCTGGAGAAGGAAAAGATTCTTGAAGAACAACCTGCATTCTTGCGTCAGTTCTCATCTGACATTCTTCCTGTTTTAATTGAGCAGGTCGTCAAGTCTGGTGCAAATTTAAGTGTGTGCTATGGTTGTCTTTCAGTGATGAGCAATATCATTTATTTCAGTAATGTGGATATGCTTCAAGATCTTCTAAAAGACTCGAACATTTCAAGTTTCTTGGCTGGTCTGTTGGCACGAAAGGATCCCCATATACTAATTTCTGCTCTCAAGATTGTTGAGCTTCTTATGCAAAAGTTTTCTTTTGTGTGTTCAAGCTCATTTATTAAAGAGGGTGTTGTTTATTCCATCGAAATGCTTTTGGAGCATGAAAATCAATCAGATTCTTTGGGACAAAAATCTGATCAGCAAGATAATCAAATGGCCCTGAGAGATGTTTCAAGGTGCTCATGCTATGTGTTGGATCAGCTAAACACTGTTTCATCGGAAAGAAAGGTTTGTGGACTTGGGAAGGATGCTGTTGTCACTCTAGCAAAGCATATTAAAGCTACCTATTTCTCTGATGAATCTGTGAATTGTGAAGTAGGTGTGAGTAAAGATTTGAAAAAGCTTAAGATTATGTGTTCAGCATTCAATGAAGCTGTTGACCAATCATCATTCATTGATGATTCTAAAAATAAAGAGTTGACTCAATTGTTAGGTCAAGTTATATGTGAGATTAATTTGGGTGAAGCTATTTCCAGTTTTGAGTTTGTTGAGAGCGGAATCATAAGATCCTTGGTGCATTACTTATCCAACGGTCGGTATCTCAGGAAAGATCTTTCTGATTGCTTATCAACAACTGACAGTTTTACCATTCTGAAGAGGCTTCAAACATTTACTGGCATTTCTTTCTCTAAAGCTGGCCAAAATTGCGAGGATATGTTTTTCACGGTTTTAGTACGAAAGTTGCAGGATGCATTGACAGCTTTTGATAATTTTCCTGTGATTGTGAGTCAGTTTTTTAAACCCAGAAGTAATTATTCTGATATCCCAACTAAGCATTCTACACTGCTTCCATGCTTAAGAGTACATTTTGTGAGGGAAGATGGGGAGCTGGACTTGTCAGATTTTAGTGATGTTCTGTCTGTTGAGGTTTCTTCATCATTTGTTGCTATTGAAGAAAATCTGTGGCCCAAAGTTTGTGCAAGCACGAGTGGACAACTGCAGAAACAAAAGGGAAAGGATAAATCCACAAATACTGAAGTGTCTACTGTTAGATGCCCAGAAGTAAATGTTCCTCAGGAACTTGATCCCAATATTGAGCACATGCCATCAACAAACTTTGCACAGGCTCTTATTTACCAGGAGCAGCAAGCTTCACTGGAGGACACCAGCTTGAAACTTAAGGAAATGATGACTGAGAACAATTGTAGCCCTCAACCTTCCAGCGAGGGGCATGCTGAAGGTAGCAAAATGTCAAGCTCGAGCAGTGATGATGCAACATCTAAATTGATGTTTTCAATTGAAGGGAGAGAAATTGATCGGTCAATGAATATTTATCAAGCAATTCTACAATTCCATTTAAATGCAGAATCAGATTTGGTTGTTGGGCCAAACTTCTGGACGGATGTGTACAAAGTGTCATATAGAAAATCTTCACAAGTTGCTACCAATTTTCAGGCAAATTCTAGTGATTCTCAATCATTTCTTTTACAGGAAAAAGCTGAATACCCCTGGCACAAACTTCCATTCATTTCCAGCTTGTTTTTTGCGGAACTACCTTATGCACTATTTATACAATATCATTCATTCCAATGGGAGGGGGAACTAGCTCCCAGTACCCCTACAAAGCCGATTAAATCAGGAGCGGTGAAGAAAGCAATGTCAGTCCAAGAGAAAACGAATAAGCTGTATTCATTCGAAAAGGAATGCTGCCAAAATTTTCCGATATGCATTAAAGGCTGGTCTTCATCGGCCCACCAAATTATTGACTGTATTACAGGGTGTTTAGTCAACTAA

Network for GWHGAAEX006989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX006989
MDRGRKRPEIADQLPADKRACSSSEFRPAAPDAAAAGSSSSSSSLPPPSSSELPDCDMESSSSGRGGGDSAYGSCESDDDPHHHQPRMGCGASREKFQRMLSVLNADDAGPSAQLASLTELCEELSFCVEDSLGYFPMDSALPSLVRLAGSEGDPDIMLLAIRAITYLCDVIPRSADAAVRHGALPVLCDRLLSIEYLDVAEQSLQALEKISRKQPVPCLKAGAVMAVLGFMDFFSTSVQRLALSTVANVCKKLPSDCSYVVLEVVPTLCNILQYEDSKLVETAVTCLIRITDCFSNSSEILDELCKHGMIGNSLHLITVDGRTTLSQTAFVGLIGLLTKLATDSPVAIRTLFELGVSSSLKRILIASGVSYGTSHSYPEGVYCNQQVYEVLKLLNQMMPSEARDDGKIQLVLEKEKILEEQPAFLRQFSSDILPVLIEQVVKSGANLSVCYGCLSVMSNIIYFSNVDMLQDLLKDSNISSFLAGLLARKDPHILISALKIVELLMQKFSFVCSSSFIKEGVVYSIEMLLEHENQSDSLGQKSDQQDNQMALRDVSRCSCYVLDQLNTVSSERKVCGLGKDAVVTLAKHIKATYFSDESVNCEVGVSKDLKKLKIMCSAFNEAVDQSSFIDDSKNKELTQLLGQVICEINLGEAISSFEFVESGIIRSLVHYLSNGRYLRKDLSDCLSTTDSFTILKRLQTFTGISFSKAGQNCEDMFFTVLVRKLQDALTAFDNFPVIVSQFFKPRSNYSDIPTKHSTLLPCLRVHFVREDGELDLSDFSDVLSVEVSSSFVAIEENLWPKVCASTSGQLQKQKGKDKSTNTEVSTVRCPEVNVPQELDPNIEHMPSTNFAQALIYQEQQASLEDTSLKLKEMMTENNCSPQPSSEGHAEGSKMSSSSSDDATSKLMFSIEGREIDRSMNIYQAILQFHLNAESDLVVGPNFWTDVYKVSYRKSSQVATNFQANSSDSQSFLLQEKAEYPWHKLPFISSLFFAELPYALFIQYHSFQWEGELAPSTPTKPIKSGAVKKAMSVQEKTNKLYSFEKECCQNFPICIKGWSSSAHQIIDCITGCLVN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10590	TRIP12	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.210
SRP064423	SRR2545915	Juvenile tuber	23.610
SRP108465	SRR5643513	five period of Gastrodia elata	12.350
	SRR5643514	five period of Gastrodia elata	15.190
	SRR5643515	five period of Gastrodia elata	14.690
	SRR5643524	five period of Gastrodia elata	14.770
	SRR5643525	five period of Gastrodia elata	16.970
	SRR5643528	five period of Gastrodia elata	15.330
	SRR5643658	five period of Gastrodia elata	20.310
	SRR5643659	five period of Gastrodia elata	14.060
	SRR5643660	five period of Gastrodia elata	15.410
	SRR5643661	five period of Gastrodia elata	14.490
	SRR5643662	five period of Gastrodia elata	13.390
	SRR5643663	five period of Gastrodia elata	15.300
	SRR5643664	five period of Gastrodia elata	15.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.290
SRP279888	Gastro	Gastrodia elata tuber	15.94
	Juven	Juvenile tuber	23.48
	Mother_Gastro	Mother tuber of Gastrodia elata	16.22
	Mother_Juven	Mother tuber of Juvenile	26.00