Gene detail

Detail information of GWHGAAEX006993/evm.TU.scaffold_193.12

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|170290625\|ref\|YP_001737441.1\|	9.00E-75	DNA replication ATPase HolB small subunit [Candidatus Korarchaeum cryptofilum OPF8]
KOG	KOG0989	1.00E-171	Replication factor C, subunit RFC4
nr	gi\|702382809\|ref\|XP_010063937.1\|	0	PREDICTED: replication factor C subunit 2 [Eucalyptus grandis]
Swissprot	tr\|Q9FXM3\|RFC2_ORYSJ	0	Replication factor C subunit 2
trEMBL	tr\|A0A059BZY9\|A0A059BZY9_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW71235.1}
TAIR	AT1G21690	1.00E-171	ATPase family associated with various cellular activities (AAA)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000204	331781	377160	+

Transcript Sequence
>GWHTAAEX006993 ATGGAGGATTTGAGTGAGGGTTTGTGGGTAATTATAGAAGAAGATGAAAGAGGAAGGGGGGTTTCGGCCAAACGGGGGGCGGGGGTAGGCCAGGCAGGGGTTGGGAATGGGGGCGGCCGATTTTGGTGGGGCTGGGCAGTAGCGCGTCGATCACTAAAGAGAGTCGTGCGTCACACGGCTCCTGCGTGCGGCGCCCGCAAGTGGGACCTAAGGCGCGGATGCATACGAGGGCCGAAGATTTCGCGCGCGTGCTCGGGGTGCCGGCCGAAGCAAGTTAAGGACGTAGCCCAGCAGGAGGAGGTCGTTCGAGTCCTTACTAATACTCTTGAGACTGCCAACTGTCCTCATATGCTCTTCTATGGACCTCCCGGAACTGGTAAGACCACAACGGCTTTAGCCATCGCGCACCAGTTATTTGGACCTGAACTGTACAAATCACGAGTTTTAGAATTAAATGCAAGCGATGACCGCGGAATCAATGTCGTGCGGACAAAAATAAAGGATTTTGCTGCTGTGGCGGTGGGTTCTAATAATCGTCTTAGTGGCTATCCTTGTCCGCCTTATAAAATCATCATCTTAGATGAAGCAGATTCGATGACTGAAGACGCTCAGAATGCTTTGAGACGCACTATGGAGACTTACTCTAAAGTCACAAGGTTTTTCTTCATTTGCAACTACATAAGCAGGATAATTGAACCACTGGCTTCAAGATGTGCAAAATTTAGATTCAAACCTCTCGCTGAAGAGGTTATGAGTAGTCGCATCTCACACATATGTTGTGAGGAAGGCCTTAACTTGAATCAAGAGGCGCTTTCAACTTTGAGCTTTTTTTCTGAGGGAGATCTTCGCCGTGCGATAACATACTTGCAGAGTGCTGCTCGCTTATATGGGTCTTCAATTTCATCCAAGGAGTTAATCAGCGTTTCTGGGGTGATACCTCAGGATGCTGTTCAGGCCTTATTTGGAGCCTGTAAGACTGGAGAGTTTGATGCAATGAACAAGGAAGTCAATAATGTGATTTCAGAGGGATATCCCGTTTCACAAATGCTATCTCGGTTGCTTGAACTGATTGTCAACTCAGATGACATTACTGATACACAAAAGGCAAGGATATGTAAGAGGTTGGCTGAAGCAGATAAGTGCTTGATTGATGGAGCTGACGAGTACCTGCAGCTGATGGATGTCTGCAGTCATTCTATGCGAGCTCTTTGTGACATGCCGCAGGAGATGCAGTTTGAATAGATGACAGACGCTGTGATATCTTGAAATCGTCAAGTGCTAAGAAAAGGTTATGATGTGCAAGAAGAAAGAATATGGAAAGAAGCTGTTTAGCCTTACAATAATCTCATGCCTATATCCTTTGTTTTGATAATTTAATGGATAATAACCGAACCTATGGATAGATATACTAGACAGAATCTGTAAATTTTTTTGTGATTCGCTTAACTCTGAAAAAAAAGTCCCAACTACCTTGCCACAACCATTTTCTAGAATCATTTTTTATTCATAAATGGAAATTTTAGAAATATTTGAATCTCAAAAGTAAAGGTATTATATATAAAATACCTTTTATCACCTTAAGTGATTGTTGGCAAGCATTTTTATCAAATCATCTTTTTTGACTGTGTTAATG

Network for GWHGAAEX006993

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	117	244	4.90E-17
PF08542.10	Rep_fac_C	313	397	2.70E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10755	RFC2_4	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006260	Biological Process	DNA replication
GO:0005524	Molecular Function	ATP binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	96.350
SRP064423	SRR2545915	Juvenile tuber	84.680
SRP108465	SRR5643513	five period of Gastrodia elata	40.500
	SRR5643514	five period of Gastrodia elata	38.880
	SRR5643515	five period of Gastrodia elata	38.640
	SRR5643524	five period of Gastrodia elata	40.070
	SRR5643525	five period of Gastrodia elata	41.330
	SRR5643528	five period of Gastrodia elata	39.070
	SRR5643658	five period of Gastrodia elata	43.670
	SRR5643659	five period of Gastrodia elata	45.280
	SRR5643660	five period of Gastrodia elata	48.800
	SRR5643661	five period of Gastrodia elata	45.480
	SRR5643662	five period of Gastrodia elata	39.470
	SRR5643663	five period of Gastrodia elata	39.150
	SRR5643664	five period of Gastrodia elata	39.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	61.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.790
SRP279888	Gastro	Gastrodia elata tuber	62.36
	Juven	Juvenile tuber	52.95
	Mother_Gastro	Mother tuber of Gastrodia elata	37.02
	Mother_Juven	Mother tuber of Juvenile	44.52