Detail information of GWHGAAEX006995/evm.TU.scaffold_193.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG42653.00E-89Predicted E3 ubiquitin ligase
nrgi|672146396|ref|XP_008797036.1|1.94E-112PREDICTED: probable E3 ubiquitin-protein ligase LUL4 [Phoenix dactylifera]
Swissprottr|Q8LA32|LUL4_ARATH4.00E-92Probable E3 ubiquitin-protein ligase LUL4
trEMBLtr|A0A068VGM4|A0A068VGM4_COFCA2.00E-103Coffea canephora
TAIRAT3G061403.00E-89RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000204476567479795+
Transcript Sequence

Network for GWHGAAEX006995

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_33283745.30E-16
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.920
SRR2545915Juvenile tuber22.160
SRP108465SRR5643513five period of Gastrodia elata34.460
SRR5643514five period of Gastrodia elata33.070
SRR5643515five period of Gastrodia elata37.110
SRR5643524five period of Gastrodia elata36.870
SRR5643525five period of Gastrodia elata34.470
SRR5643528five period of Gastrodia elata39.670
SRR5643658five period of Gastrodia elata35.650
SRR5643659five period of Gastrodia elata24.260
SRR5643660five period of Gastrodia elata21.660
SRR5643661five period of Gastrodia elata25.220
SRR5643662five period of Gastrodia elata24.110
SRR5643663five period of Gastrodia elata21.490
SRR5643664five period of Gastrodia elata21.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.020
SRR6049655Rhizomagastrodiae_C368-T10_good_131.190
SRR6049656Rhizomagastrodiae_C368-T07_good_125.560
SRR6049657Rhizomagastrodiae_C368-T07_good_120.760
SRR6049658Rhizomagastrodiae_C368-T04_good_124.640
SRR6049659Rhizomagastrodiae_C368-T04_good_123.710
SRR6049660Rhizomagastrodiae_C368-T01_good_123.850
SRR6049661Rhizomagastrodiae_C368-T04_good_124.870
SRR6049662Rhizomagastrodiae_C368-T01_good_126.530
SRR6049663Rhizomagastrodiae_C368-T01_good_124.020
SRR6049664Rhizomagastrodiae_C368-T10_good_137.150
SRR6049665Rhizomagastrodiae_C368-T10_good_137.150
SRP279888GastroGastrodia elata tuber 25.61
JuvenJuvenile tuber36.81
Mother_GastroMother tuber of Gastrodia elata 102.44
Mother_JuvenMother tuber of Juvenile 75.62