Detail information of GWHGAAEX007004/evm.TU.scaffold_193.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209964650|ref|YP_002297565.1| | 2.00E-81 | enoyl-CoA hydratase [Rhodospirillum centenum SW] |
| nr | gi|672144801|ref|XP_008796304.1| | 0 | PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9LKJ1|HIBC1_ARATH | 3.00E-176 | 3-hydroxyisobutyryl-CoA hydrolase 1 |
| trEMBL | tr|M0TQI3|M0TQI3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14800_001} |
| TAIR | AT5G65940 | 1.00E-175 | beta-hydroxyisobutyryl-CoA hydrolase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000204 | 969369 | 1004104 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007004
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16113.4 | ECH_2 | 69 | 401 | 2.60E-122 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05605 | HIBCH | Metabolic pathways | map01100 |
| Carbon metabolism | map01200 | ||
| Propanoate metabolism | map00640 | ||
| Cysteine and methionine metabolism | map00270 | ||
| beta-Alanine metabolism | map00410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003860 | Molecular Function | 3-hydroxyisobutyryl-CoA hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 53.290 |
| SRR2545915 | Juvenile tuber | 38.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.180 |
| SRR5643514 | five period of Gastrodia elata | 27.780 | |
| SRR5643515 | five period of Gastrodia elata | 26.070 | |
| SRR5643524 | five period of Gastrodia elata | 25.950 | |
| SRR5643525 | five period of Gastrodia elata | 40.070 | |
| SRR5643528 | five period of Gastrodia elata | 32.480 | |
| SRR5643658 | five period of Gastrodia elata | 38.320 | |
| SRR5643659 | five period of Gastrodia elata | 20.710 | |
| SRR5643660 | five period of Gastrodia elata | 21.820 | |
| SRR5643661 | five period of Gastrodia elata | 19.460 | |
| SRR5643662 | five period of Gastrodia elata | 21.110 | |
| SRR5643663 | five period of Gastrodia elata | 23.460 | |
| SRR5643664 | five period of Gastrodia elata | 23.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 60.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 70.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 50.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 53.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.57 |
| Juven | Juvenile tuber | 32.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.47 | |
| Mother_Juven | Mother tuber of Juvenile | 31.77 |