Detail information of GWHGAAEX007006/evm.TU.scaffold_193.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325279880|ref|YP_004252422.1|1.00E-12RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 220712]
KOGKOG01226.00E-150Translation initiation factor 3, subunit g (eIF-3g)
nrgi|695043608|ref|XP_009409504.1|2.66E-164PREDICTED: eukaryotic translation initiation factor 3 subunit G {ECO:0000255|HAMAP-Rule:MF_03006}-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LJH8|UBP1C_ARATH1.00E-11Oligouridylate-binding protein 1C
trEMBLtr|F6GUX9|F6GUX9_VITVI4.00E-164Eukaryotic translation initiation factor 3 subunit G {ECO:0000256|HAMAP-Rule:MF_03006}
TAIRAT3G114006.00E-150eukaryotic translation initiation factor 3G1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020410604301069380+
Transcript Sequence

Network for GWHGAAEX007006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12353.7eIF3g351622.00E-34
PF00076.21RRM_12252914.60E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03248EIF3G RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms129.910
SRR2545915Juvenile tuber82.590
SRP108465SRR5643513five period of Gastrodia elata140.950
SRR5643514five period of Gastrodia elata146.520
SRR5643515five period of Gastrodia elata134.720
SRR5643524five period of Gastrodia elata138.520
SRR5643525five period of Gastrodia elata163.790
SRR5643528five period of Gastrodia elata152.810
SRR5643658five period of Gastrodia elata146.170
SRR5643659five period of Gastrodia elata170.130
SRR5643660five period of Gastrodia elata193.600
SRR5643661five period of Gastrodia elata185.050
SRR5643662five period of Gastrodia elata182.990
SRR5643663five period of Gastrodia elata168.060
SRR5643664five period of Gastrodia elata200.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1182.750
SRR6049655Rhizomagastrodiae_C368-T10_good_176.880
SRR6049656Rhizomagastrodiae_C368-T07_good_1170.800
SRR6049657Rhizomagastrodiae_C368-T07_good_1195.060
SRR6049658Rhizomagastrodiae_C368-T04_good_1206.450
SRR6049659Rhizomagastrodiae_C368-T04_good_1214.930
SRR6049660Rhizomagastrodiae_C368-T01_good_1197.530
SRR6049661Rhizomagastrodiae_C368-T04_good_1174.690
SRR6049662Rhizomagastrodiae_C368-T01_good_1170.480
SRR6049663Rhizomagastrodiae_C368-T01_good_1199.010
SRR6049664Rhizomagastrodiae_C368-T10_good_1162.730
SRR6049665Rhizomagastrodiae_C368-T10_good_1162.730
SRP279888GastroGastrodia elata tuber 198.12
JuvenJuvenile tuber216.35
Mother_GastroMother tuber of Gastrodia elata 184.59
Mother_JuvenMother tuber of Juvenile 162.89