Gene detail

Detail information of GWHGAAEX007017/evm.TU.scaffold_193.48

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1303	1.00E-163	Amino acid transporters
nr	gi\|672114671\|ref\|XP_008778079.1\|	0	PREDICTED: vacuolar amino acid transporter 1-like [Phoenix dactylifera]
Swissprot	tr\|Q9FKS8\|LHT1_ARATH	2.00E-17	Lysine histidine transporter 1
trEMBL	tr\|M0TCJ9\|M0TCJ9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P34060_001}
TAIR	AT2G39130	1.00E-163	Transmembrane amino acid transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000204	1456229	1460410	+

Transcript Sequence
>GWHTAAEX007017 TTGTTTTCTTGTTTTCTTTTCCGTAAATATATACCCTCTTAACAAATTTTAGTTAGAAGGGTATATGAAAGCGATAGGTAAGAAAGAAAGGAAAAAAATCGAACGGGATGAAGAACGAAGAAGAATTAGAGGCTGATAAAGGTTTCGTGTTCTTCGTAGACGATGAAGAAAACCAGGAGCAGAAGTACGAGCATGCTTCCGCAGCTTCGTCCTCTTCTTCATCTGCTTACTATAATGATCCCTATGAAAGCTTCGAAGGCTCTTACCAAGCCTCATGGCCTCAGAGCTTCAGGCAATCAGTGGATGTACTGAGCAGCGTCCTCTCTCCGGGCGCGGGGTTCCTCGCAGGATCAAGCCTCGTCCATGCCGGCAGCTCCTTATTCCGCGGCGGGAGCATTTTTGGAGAAGACCAACACAATCAGCTATTTATAACAAAGCCCCTCATTTCTCAGACGCCCTCTACCAATGCCATTCCTGCTTCAAAGCCCGGATCCTTTTTCTACCCTTCCGTCCTCCCTCCCCCTCCTCGCTGCTCCGTCTTCCAAGCCATCGTCAACGGGCTCAATGTTCTATGTGGCGTGGGGATACTTACGACGCCTTATGCGGTGAAGGAAGGGGGCTGGCTTGGGCTTACGCTTCTGATTCTTCTAGGGCTGATATCGTGCTACACTGGGATTCTGCTGAAGAAATGCCTCGATTCTTCGCTTGCAATGCAGACGTATCCGGATATTGGCCAGGCGGCGTTTGGGACTCCTGGAAGACTCTGCATCTCTATTGTCTTATACCTGGAACTTTATGCAAGTTGTGTAGAATACATTATTTTAGTGAGTGACAGCTTGTCATCAATTTTTCCGGGCACATATGTCTATTTACTGGGGATTGATCTGAGCTGCCACCAGCTCTTTGCTGTTACTGCAGCAATAGCAATTCTTCCCACTGTCTGGCTTAGAGATCTGAGTTTGCTTTCATTCCTTTCAGCTGGAGGTGTTGTTGCTACAATTCTGGTGGTTCTATGCTTGTTCTGGGATGGTGTAGCAGATGGAGTGGGCTTTCATCAAGAAGGAAAGGCATTGAACCTTGCAAACTTCCCAGTTGCACTTGGATTGTTCAGCTTCTGCTACTCTGGTCATTCTGTTTTCCCCAATATATATTCTTCCATGACAGAAAGGCCTCAATTCTCAAAAGTACTATTGGTTTGCTTTACTCTATGCACGGCTGTGTATGCTGCTGTTGCTTCAGCTGGATTTCTGATGTTTGGAGACTCCCTTAAGTCGCAGTTCACTCTGAACATGCCTCGTCATTCCATGTCCTCGAGAATTGCAATCTGGACAACGGTTGTTAACCCACTCACTAAGTATGCTATGACGATGACTCCAGTTGCGCTGAGCCTTGAGGAGCTCTTGCCTCCAACTCAACGGTCCTTTTTGGTTGCTTTATTGATTAGAACACTTCTGGTCATATCGACATTAGTTGTGGCTCTCATGCTACCATTTTTTGGTTTTTTGATGGCATTGCTTGGATCCTTTTTCACTATGCTGGTGGCTCTCATTTTACCTTGCGTATGCTATCTGAGCATTCAAAGAAACTCTGTGACTGTTGTAGAGGTAGTGCTTTGCATCTTCATTATTATAGTGGGAACTCTCTGTGCTGTTATCGGATCATACTCTTCAATTCAAAAAATGGTGGAAAGTTTGGTACAATAGAATCTGCATGAGTTAGCTGAATCGAAGATATGCCTATGTCACCTGAAAATAAATGTTGATGTGGGGGAGTGCATTTGTAGTAATTTCATTATTTTTTACTTTGAAAGCTGCTAGTTTAATGTATCTTGACAAATTTCAAGAGCTACAATTGCACCCCTTAACAAAATGTGCGTTCTAAACACAAGTATCTTCTCTAATGAAGCTTTACTTTTAAC

Network for GWHGAAEX007017

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	142	522	1.50E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15015	SLC32A, VGAT	GABAergic synapse	map04727
		Retrograde endocannabinoid signaling	map04723
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.340
SRP064423	SRR2545915	Juvenile tuber	11.420
SRP108465	SRR5643513	five period of Gastrodia elata	5.990
	SRR5643514	five period of Gastrodia elata	3.610
	SRR5643515	five period of Gastrodia elata	4.770
	SRR5643524	five period of Gastrodia elata	4.630
	SRR5643525	five period of Gastrodia elata	0.870
	SRR5643528	five period of Gastrodia elata	1.870
	SRR5643658	five period of Gastrodia elata	1.790
	SRR5643659	five period of Gastrodia elata	1.620
	SRR5643660	five period of Gastrodia elata	1.320
	SRR5643661	five period of Gastrodia elata	2.510
	SRR5643662	five period of Gastrodia elata	1.280
	SRR5643663	five period of Gastrodia elata	1.550
	SRR5643664	five period of Gastrodia elata	1.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.440
SRP279888	Gastro	Gastrodia elata tuber	2.59
	Juven	Juvenile tuber	3.54
	Mother_Gastro	Mother tuber of Gastrodia elata	6.70
	Mother_Juven	Mother tuber of Juvenile	1.84