Detail information of GWHGAAEX007023/evm.TU.scaffold_194.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|357393793|ref|YP_004908634.1|5.00E-17hypothetical protein KSE_69190 [Kitasatospora setae KM-6054]
KOGKOG14265.00E-25FOG: RCC1 domain
nrgi|414880675|tpg|DAA57806.1|6.12E-38TPA: putative regulator of chromosome condensation (RCC1) family protein [Zea mays]
Swissprottr|Q9FN03|UVR8_ARATH7.00E-11Ultraviolet-B receptor UVR8
trEMBLtr|A0A096T5S7|A0A096T5S7_MAIZE2.00E-38Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G311003_P03}
TAIRAT5G115805.00E-25Regulator of chromosome condensation (RCC1) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000192456767481686+
Transcript Sequence

Network for GWHGAAEX007023

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00415.17RCC121762.30E-15
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.020
SRR2545915Juvenile tuber24.970
SRP108465SRR5643513five period of Gastrodia elata21.100
SRR5643514five period of Gastrodia elata25.960
SRR5643515five period of Gastrodia elata25.460
SRR5643524five period of Gastrodia elata18.420
SRR5643525five period of Gastrodia elata17.310
SRR5643528five period of Gastrodia elata9.120
SRR5643658five period of Gastrodia elata8.100
SRR5643659five period of Gastrodia elata20.910
SRR5643660five period of Gastrodia elata21.400
SRR5643661five period of Gastrodia elata22.380
SRR5643662five period of Gastrodia elata24.850
SRR5643663five period of Gastrodia elata23.000
SRR5643664five period of Gastrodia elata20.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_149.160
SRR6049655Rhizomagastrodiae_C368-T10_good_138.420
SRR6049656Rhizomagastrodiae_C368-T07_good_132.670
SRR6049657Rhizomagastrodiae_C368-T07_good_129.390
SRR6049658Rhizomagastrodiae_C368-T04_good_133.820
SRR6049659Rhizomagastrodiae_C368-T04_good_150.750
SRR6049660Rhizomagastrodiae_C368-T01_good_128.620
SRR6049661Rhizomagastrodiae_C368-T04_good_136.050
SRR6049662Rhizomagastrodiae_C368-T01_good_120.770
SRR6049663Rhizomagastrodiae_C368-T01_good_138.520
SRR6049664Rhizomagastrodiae_C368-T10_good_125.350
SRR6049665Rhizomagastrodiae_C368-T10_good_125.350
SRP279888GastroGastrodia elata tuber 30.23
JuvenJuvenile tuber69.25
Mother_GastroMother tuber of Gastrodia elata 35.71
Mother_JuvenMother tuber of Juvenile 38.50