Detail information of GWHGAAEX007024/evm.TU.scaffold_194.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|310825568|ref|YP_003957926.1|2.00E-21bnr repeat domain-containing protein [Stigmatella aurantiaca DW4/3-1]
KOGKOG14262.00E-147FOG: RCC1 domain
nrgi|743756235|ref|XP_010915763.1|0PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Elaeis guineensis]
Swissprottr|Q9FN03|UVR8_ARATH7.00E-22Ultraviolet-B receptor UVR8
trEMBLtr|J3L3N2|J3L3N2_ORYBR0Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G38380.1}
TAIRAT5G115802.00E-147Regulator of chromosome condensation (RCC1) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000192481971483524+
Transcript Sequence

Network for GWHGAAEX007024

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00415.17RCC11281762.20E-12
PF00415.17RCC11892362.50E-06
PF00415.17RCC12403000.00014
PF00415.17RCC13063412.10E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.140
SRR2545915Juvenile tuber33.280
SRP108465SRR5643513five period of Gastrodia elata27.610
SRR5643514five period of Gastrodia elata25.290
SRR5643515five period of Gastrodia elata25.360
SRR5643524five period of Gastrodia elata21.830
SRR5643525five period of Gastrodia elata18.500
SRR5643528five period of Gastrodia elata16.880
SRR5643658five period of Gastrodia elata16.910
SRR5643659five period of Gastrodia elata29.840
SRR5643660five period of Gastrodia elata37.730
SRR5643661five period of Gastrodia elata31.880
SRR5643662five period of Gastrodia elata29.820
SRR5643663five period of Gastrodia elata33.520
SRR5643664five period of Gastrodia elata31.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_144.770
SRR6049655Rhizomagastrodiae_C368-T10_good_118.800
SRR6049656Rhizomagastrodiae_C368-T07_good_134.450
SRR6049657Rhizomagastrodiae_C368-T07_good_141.390
SRR6049658Rhizomagastrodiae_C368-T04_good_152.630
SRR6049659Rhizomagastrodiae_C368-T04_good_160.370
SRR6049660Rhizomagastrodiae_C368-T01_good_149.390
SRR6049661Rhizomagastrodiae_C368-T04_good_141.380
SRR6049662Rhizomagastrodiae_C368-T01_good_130.890
SRR6049663Rhizomagastrodiae_C368-T01_good_143.260
SRR6049664Rhizomagastrodiae_C368-T10_good_138.810
SRR6049665Rhizomagastrodiae_C368-T10_good_138.810
SRP279888GastroGastrodia elata tuber 41.68
JuvenJuvenile tuber60.49
Mother_GastroMother tuber of Gastrodia elata 37.00
Mother_JuvenMother tuber of Juvenile 32.69