Detail information of GWHGAAEX007025/evm.TU.scaffold_194.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29107.00E-100Uncharacterized conserved protein predicted to be involved in protein sorting
nrgi|743861494|ref|XP_011031132.1|2.42E-101PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Populus euphratica]
Swissprottr|Q9FY89|VP202_ARATH2.00E-100Vacuolar protein sorting-associated protein 20 homolog 2
trEMBLtr|B9H4L4|B9H4L4_POPTR1.00E-101HISTIDINOL DEHYDROGENASE family protein {ECO:0000313|EMBL:EEE94044.1}
TAIRAT5G092607.00E-100vacuolar protein sorting-associated protein 20.2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000192747539780898-
Transcript Sequence

Network for GWHGAAEX007025

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.20Snf7171751.00E-41
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12195CHMP6, VPS20 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034Biological Processvacuolar transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.160
SRR2545915Juvenile tuber21.370
SRP108465SRR5643513five period of Gastrodia elata12.260
SRR5643514five period of Gastrodia elata15.530
SRR5643515five period of Gastrodia elata13.720
SRR5643524five period of Gastrodia elata14.070
SRR5643525five period of Gastrodia elata26.650
SRR5643528five period of Gastrodia elata25.180
SRR5643658five period of Gastrodia elata26.970
SRR5643659five period of Gastrodia elata14.840
SRR5643660five period of Gastrodia elata13.420
SRR5643661five period of Gastrodia elata12.160
SRR5643662five period of Gastrodia elata12.970
SRR5643663five period of Gastrodia elata12.900
SRR5643664five period of Gastrodia elata12.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.640
SRR6049655Rhizomagastrodiae_C368-T10_good_117.200
SRR6049656Rhizomagastrodiae_C368-T07_good_116.460
SRR6049657Rhizomagastrodiae_C368-T07_good_113.840
SRR6049658Rhizomagastrodiae_C368-T04_good_114.000
SRR6049659Rhizomagastrodiae_C368-T04_good_118.020
SRR6049660Rhizomagastrodiae_C368-T01_good_115.830
SRR6049661Rhizomagastrodiae_C368-T04_good_115.100
SRR6049662Rhizomagastrodiae_C368-T01_good_116.020
SRR6049663Rhizomagastrodiae_C368-T01_good_114.760
SRR6049664Rhizomagastrodiae_C368-T10_good_117.460
SRR6049665Rhizomagastrodiae_C368-T10_good_117.460
SRP279888GastroGastrodia elata tuber 15.96
JuvenJuvenile tuber10.71
Mother_GastroMother tuber of Gastrodia elata 20.34
Mother_JuvenMother tuber of Juvenile 18.59