Detail information of GWHGAAEX007032/evm.TU.scaffold_195.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|421919663|gb|AFX68812.1|2.02E-23ERF transcription factor 8 [Nicotiana tabacum]
Swissprottr|Q8H1E4|RAP24_ARATH7.00E-25Ethylene-responsive transcription factor RAP2-4
trEMBLtr|D6MK00|D6MK00_9ASPA1.00E-25Transcription factor {ECO:0000313|EMBL:ADG57847.1} (Fragment)
TAIRAT1G780802.00E-24related to AP2 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000200139289140007-
Transcript Sequence

Network for GWHGAAEX007032

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.19AP28502.40E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.780
SRR2545915Juvenile tuber29.210
SRP108465SRR5643513five period of Gastrodia elata14.670
SRR5643514five period of Gastrodia elata21.970
SRR5643515five period of Gastrodia elata22.840
SRR5643524five period of Gastrodia elata11.220
SRR5643525five period of Gastrodia elata49.720
SRR5643528five period of Gastrodia elata27.740
SRR5643658five period of Gastrodia elata39.450
SRR5643659five period of Gastrodia elata26.560
SRR5643660five period of Gastrodia elata25.230
SRR5643661five period of Gastrodia elata32.460
SRR5643662five period of Gastrodia elata70.350
SRR5643663five period of Gastrodia elata52.870
SRR5643664five period of Gastrodia elata94.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.680
SRR6049655Rhizomagastrodiae_C368-T10_good_116.960
SRR6049656Rhizomagastrodiae_C368-T07_good_111.110
SRR6049657Rhizomagastrodiae_C368-T07_good_115.570
SRR6049658Rhizomagastrodiae_C368-T04_good_18.830
SRR6049659Rhizomagastrodiae_C368-T04_good_113.970
SRR6049660Rhizomagastrodiae_C368-T01_good_110.170
SRR6049661Rhizomagastrodiae_C368-T04_good_110.050
SRR6049662Rhizomagastrodiae_C368-T01_good_15.410
SRR6049663Rhizomagastrodiae_C368-T01_good_14.720
SRR6049664Rhizomagastrodiae_C368-T10_good_19.890
SRR6049665Rhizomagastrodiae_C368-T10_good_19.890
SRP279888GastroGastrodia elata tuber 30.81
JuvenJuvenile tuber9.83
Mother_GastroMother tuber of Gastrodia elata 17.14
Mother_JuvenMother tuber of Juvenile 8.09