Detail information of GWHGAAEX007043/evm.TU.scaffold_195.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428209832|ref|YP_007094185.1|6.00E-1650S ribosomal protein L35 [Chroococcidiopsis thermalis PCC 7203]
nrgi|590579814|ref|XP_007013892.1|2.44E-4450S ribosomal protein L35 isoform 2 [Theobroma cacao]
Swissprottr|P23326|RK35_SPIOL9.00E-3850S ribosomal protein L35, chloroplastic (Precursor)
trEMBLtr|A0A061GPQ7|A0A061GPQ7_THECC9.00E-4550S ribosomal protein L35 {ECO:0000256|RuleBase:RU000568}
TAIRAT2G240902.00E-24Ribosomal protein L35

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000200370325386169-
Transcript Sequence

Network for GWHGAAEX007043

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01632.18Ribosomal_L35p751328.00E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02916RP-L35, MRPL35, rpmI Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.190
SRR2545915Juvenile tuber23.320
SRP108465SRR5643513five period of Gastrodia elata19.720
SRR5643514five period of Gastrodia elata19.480
SRR5643515five period of Gastrodia elata19.340
SRR5643524five period of Gastrodia elata21.610
SRR5643525five period of Gastrodia elata19.840
SRR5643528five period of Gastrodia elata17.080
SRR5643658five period of Gastrodia elata16.920
SRR5643659five period of Gastrodia elata21.350
SRR5643660five period of Gastrodia elata19.300
SRR5643661five period of Gastrodia elata21.730
SRR5643662five period of Gastrodia elata21.090
SRR5643663five period of Gastrodia elata21.400
SRR5643664five period of Gastrodia elata18.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.370
SRR6049655Rhizomagastrodiae_C368-T10_good_130.670
SRR6049656Rhizomagastrodiae_C368-T07_good_122.490
SRR6049657Rhizomagastrodiae_C368-T07_good_120.120
SRR6049658Rhizomagastrodiae_C368-T04_good_124.510
SRR6049659Rhizomagastrodiae_C368-T04_good_124.390
SRR6049660Rhizomagastrodiae_C368-T01_good_120.080
SRR6049661Rhizomagastrodiae_C368-T04_good_125.830
SRR6049662Rhizomagastrodiae_C368-T01_good_122.180
SRR6049663Rhizomagastrodiae_C368-T01_good_121.310
SRR6049664Rhizomagastrodiae_C368-T10_good_124.340
SRR6049665Rhizomagastrodiae_C368-T10_good_124.340
SRP279888GastroGastrodia elata tuber 35.52
JuvenJuvenile tuber22.83
Mother_GastroMother tuber of Gastrodia elata 39.36
Mother_JuvenMother tuber of Juvenile 27.17