Detail information of GWHGAAEX007044/evm.TU.scaffold_195.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0011 | 9.00E-140 | Nucleotide excision repair factor NEF2, RAD23 component |
| nr | gi|672141134|ref|XP_008794386.1| | 6.63E-180 | PREDICTED: ubiquitin receptor RAD23b-like [Phoenix dactylifera] |
| Swissprot | tr|Q84L33|RD23B_ARATH | 2.00E-149 | Ubiquitin receptor RAD23b |
| trEMBL | tr|M0S315|M0S315_MUSAM | 3.00E-167 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P25580_001} |
| TAIR | AT1G16190 | 9.00E-140 | Rad23 UV excision repair protein family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000200 | 436648 | 493065 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007044
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00240.22 | ubiquitin | 3 | 76 | 8.00E-17 |
| PF00627.30 | UBA | 151 | 186 | 2.90E-11 |
| PF09280.10 | XPC-binding | 252 | 307 | 4.60E-21 |
| PF00627.30 | UBA | 331 | 367 | 2.40E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10839 | RAD23, HR23 | Protein processing in endoplasmic reticulum | map04141 |
| Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043161 | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process |
| GO:0006289 | Biological Process | nucleotide-excision repair |
| GO:0003684 | Molecular Function | damaged DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.300 |
| SRR2545915 | Juvenile tuber | 36.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.800 |
| SRR5643514 | five period of Gastrodia elata | 26.270 | |
| SRR5643515 | five period of Gastrodia elata | 23.180 | |
| SRR5643524 | five period of Gastrodia elata | 22.430 | |
| SRR5643525 | five period of Gastrodia elata | 38.760 | |
| SRR5643528 | five period of Gastrodia elata | 40.890 | |
| SRR5643658 | five period of Gastrodia elata | 44.550 | |
| SRR5643659 | five period of Gastrodia elata | 26.560 | |
| SRR5643660 | five period of Gastrodia elata | 27.240 | |
| SRR5643661 | five period of Gastrodia elata | 23.940 | |
| SRR5643662 | five period of Gastrodia elata | 27.020 | |
| SRR5643663 | five period of Gastrodia elata | 25.720 | |
| SRR5643664 | five period of Gastrodia elata | 26.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.22 |
| Juven | Juvenile tuber | 27.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.59 | |
| Mother_Juven | Mother tuber of Juvenile | 22.06 |