Detail information of GWHGAAEX007046/evm.TU.scaffold_195.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0788 | 7.00E-126 | S-adenosylmethionine decarboxylase |
| nr | gi|526784874|gb|AGR89928.1| | 0 | S-adenosyl-L-methionine decarboxylase [Dendrobium catenatum] |
| Swissprot | tr|Q42829|DCAM_HORCH | 2.00E-170 | S-adenosylmethionine decarboxylase beta chain (Precursor) |
| trEMBL | tr|Q944U3|Q944U3_DENCR | 0 | S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|PIRNR:PIRNR001355} |
| TAIR | AT3G02470 | 7.00E-126 | S-adenosylmethionine decarboxylase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000200 | 524868 | 525977 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007046
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01536.15 | SAM_decarbox | 7 | 330 | 1.50E-101 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01611 | speD, AMD1 | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 | ||
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006597 | Biological Process | spermine biosynthetic process |
| GO:0008295 | Biological Process | spermidine biosynthetic process |
| GO:0004014 | Molecular Function | adenosylmethionine decarboxylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 171.410 |
| SRR2545915 | Juvenile tuber | 157.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 419.850 |
| SRR5643514 | five period of Gastrodia elata | 555.380 | |
| SRR5643515 | five period of Gastrodia elata | 409.380 | |
| SRR5643524 | five period of Gastrodia elata | 497.180 | |
| SRR5643525 | five period of Gastrodia elata | 649.900 | |
| SRR5643528 | five period of Gastrodia elata | 839.900 | |
| SRR5643658 | five period of Gastrodia elata | 540.140 | |
| SRR5643659 | five period of Gastrodia elata | 226.890 | |
| SRR5643660 | five period of Gastrodia elata | 195.990 | |
| SRR5643661 | five period of Gastrodia elata | 245.640 | |
| SRR5643662 | five period of Gastrodia elata | 367.190 | |
| SRR5643663 | five period of Gastrodia elata | 292.710 | |
| SRR5643664 | five period of Gastrodia elata | 352.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 506.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 394.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 618.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 380.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 472.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 351.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 463.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 518.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1202.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 927.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 909.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 909.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 447.51 |
| Juven | Juvenile tuber | 149.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 596.67 | |
| Mother_Juven | Mother tuber of Juvenile | 146.93 |