Gene detail

Detail information of GWHGAAEX007052/evm.TU.scaffold_195.29

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|297621203\|ref\|YP_003709340.1\|	3.00E-19	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
KOG	KOG0698	0	Serine/threonine protein phosphatase
nr	gi\|695018562\|ref\|XP_009396250.1\|	0	PREDICTED: probable protein phosphatase 2C 11 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SZ53\|P2C60_ARATH	0	Probable protein phosphatase 2C 60
trEMBL	tr\|M0SNE3\|M0SNE3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P12780_001}
TAIR	AT4G31860	0	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000200	740620	790778	+

Transcript Sequence
>GWHTAAEX007052 AAAAATCAAACCTGGATTGTGAACATAAAGAAGAGATCGCCAATACTATTCTTACACCATCAAAGAAAGAAAATTGTTGATAGGAATGCGTGCTTTCGAACCGGCGCCTTCGTTTGTCTTCATTCGTCTCGCCTTCTCGTCTGAATTTGGTGGAGAATTAACGGCTTCTTCTCTTCCTCTTGCTCACGTCTGATCGAATTCAGCCGGCGATCTCTGACTCTGGCATAATTTTTTGGTTTTTTCAAGCAATGGGCATATATCTCAGTACTCCCAAAACTGACAAATTTTCCGAAGATGGGGAGAATAACCGAGTTAGATATGGCTTGTCTTCTATGCAAGGGTGGCGTGCAACAATGGAAGATGCACATGCTACCATTCCTGATCTTGATGACCACACATCGTTCTTTGGTGTTTATGATGGTCATGGAGGGAAGGCAGTTGCAAAGTTTTGTGCTAAATACCTGCACACCCAAGTGCTTAGGAATGAAGCTGCTTCTCCTGGAGATTTAGGGGCATCTCTTCAGAAAGCTTTCTTGAGAATGGATGAGATGATGCAAGGACAGAGAGGATGGAGAGAATTAGCTGTGGTTGGAGATAAGATGCACAAGTTTACTGGCATGATCGAAGGCTTGATATGGTCTCCAAGAGGCGGTGATTCTAATGGCCATGAAGATGATTGGGCTTTTGAACAGGGACCGCACTCTGATTTCTCCGGGCCAACATCTGGAAGCACGGCCTGTGTGGCTATTGTTCGAACAAACCAACTTATTGTTGCAAATGCGGGCGACTCTCGCTGCGTTATGTCAAGGAAGGGACAGGCAATTAATATGTCAAGGGATCACAAGCCAGAGCTAGAGTATGAGAGAGACAGGATTTTAAGAGCAGGGGGGTTTATTCATGCAGGACGAGTCAATGGAACTTTAAATCTTGCAAGAGCAATCGGTGACATGGAATTTAAGCAAAACAAGTTTTTATCTGCTGATAAACAAATTGTAACAGCTTTTCCAGACATTAGTGTTGCGGAACTTTGTGACGACGTTGAATTTATCGTTTTAGCCTGTGATGGGATCTGGGACTGCATGACAAGTCAGCAGCTGGTGGATTTCATCAATGAACATATAAGCACTGAGGGTAGCCTCTCTGCCGTCTGCGAGAGAGTGCTTGACCGCTGTTTGGCCCCATCGACTGCTGGCGAAGGCTGCGACAATATGACTATTGTTCTCGTTCAACTCAAGAAGCCCATCACTCCGAATGATGCTGAGGCTGAACCGTCAAGTCAGTCCAGATTAGCTGTTGAGGCAAATTCAGATGCTTGATCCATTTAGGCTGCAGGTTAGAAAGGGCAGTATAGCTTGAAGACAAATGTGCATAAACTGTTGTCTGTGGTGTATCTTTAAAATGAACAAAAAAAATTAATTTCTGCCCAAAAAAAAATTCATTTTAGAATGTGTTGTATCTTCTTTTAGAATATGAGGACAATTTATTTTCTTCTCAATCTTTCGGTTGCACTTTAAAATATCTGAACTTTACTGCTGGTTGGATCAAAGCCATTACTGAGTTGGAAAGAGTGTGGCGTATGAGGATTTTTGGTTTGAAGAAAACCTGCTTGGTTCTTAAACTAATGACCTGTTAGATACTTAAAATGATTAATGCATTTTAAGCTTGTTGAGATATTTAGCTTAT

Network for GWHGAAEX007052

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	23	103	5.60E-13
PF00481.20	PP2C	140	314	1.50E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity
GO:0043169	Molecular Function	cation binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.000
SRP064423	SRR2545915	Juvenile tuber	64.370
SRP108465	SRR5643513	five period of Gastrodia elata	54.220
	SRR5643514	five period of Gastrodia elata	63.710
	SRR5643515	five period of Gastrodia elata	54.080
	SRR5643524	five period of Gastrodia elata	57.000
	SRR5643525	five period of Gastrodia elata	31.560
	SRR5643528	five period of Gastrodia elata	21.380
	SRR5643658	five period of Gastrodia elata	25.710
	SRR5643659	five period of Gastrodia elata	45.970
	SRR5643660	five period of Gastrodia elata	47.470
	SRR5643661	five period of Gastrodia elata	46.920
	SRR5643662	five period of Gastrodia elata	42.850
	SRR5643663	five period of Gastrodia elata	40.590
	SRR5643664	five period of Gastrodia elata	47.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	54.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	60.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	59.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	62.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	65.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	65.020
SRP279888	Gastro	Gastrodia elata tuber	55.32
	Juven	Juvenile tuber	57.38
	Mother_Gastro	Mother tuber of Gastrodia elata	61.43
	Mother_Juven	Mother tuber of Juvenile	51.19