Detail information of GWHGAAEX007054/evm.TU.scaffold_195.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428223842|ref|YP_007107939.1| | 3.00E-44 | GrpE protein HSP-70 cofactor [Geitlerinema sp. PCC 7407] |
| KOG | KOG3003 | 4.00E-91 | Molecular chaperone of the GrpE family |
| nr | gi|743857246|ref|XP_010942073.1| | 2.51E-114 | PREDICTED: grpE protein homolog, mitochondrial [Elaeis guineensis] |
| trEMBL | tr|M0RKX7|M0RKX7_MUSAM | 7.00E-106 | GrpE protein homolog {ECO:0000256|RuleBase:RU000640} |
| TAIR | AT5G17710 | 4.00E-91 | Co-chaperone GrpE family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000200 | 827164 | 839092 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007054
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01025.18 | GrpE | 141 | 295 | 7.20E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0000774 | Molecular Function | adenyl-nucleotide exchange factor activity |
| GO:0051087 | Molecular Function | chaperone binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 110.760 |
| SRR2545915 | Juvenile tuber | 475.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 72.640 |
| SRR5643514 | five period of Gastrodia elata | 69.880 | |
| SRR5643515 | five period of Gastrodia elata | 87.510 | |
| SRR5643524 | five period of Gastrodia elata | 63.210 | |
| SRR5643525 | five period of Gastrodia elata | 143.150 | |
| SRR5643528 | five period of Gastrodia elata | 141.700 | |
| SRR5643658 | five period of Gastrodia elata | 55.150 | |
| SRR5643659 | five period of Gastrodia elata | 166.990 | |
| SRR5643660 | five period of Gastrodia elata | 160.590 | |
| SRR5643661 | five period of Gastrodia elata | 186.860 | |
| SRR5643662 | five period of Gastrodia elata | 265.120 | |
| SRR5643663 | five period of Gastrodia elata | 253.850 | |
| SRR5643664 | five period of Gastrodia elata | 264.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 83.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 46.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 79.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 61.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 50.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 59.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 73.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 76.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 63.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 65.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 65.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 257.13 |
| Juven | Juvenile tuber | 110.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.28 | |
| Mother_Juven | Mother tuber of Juvenile | 68.59 |