Detail information of GWHGAAEX007062/evm.TU.scaffold_195.44


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|374287483|ref|YP_005034568.1|0isoleucyl-tRNA synthetase [Bacteriovorax marinus SJ]
KOGKOG04340Isoleucyl-tRNA synthetase
nrgi|672139711|ref|XP_008793645.1|0PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic isoform X1 [Phoenix dactylifera]
Swissprottr|P93736|SYV_ARATH8.00E-38Valine--tRNA ligase
trEMBLtr|A0A061EQQ9|A0A061EQQ9_THECC0TRNA synthetase class I (I, L, M and V) family protein isoform 1 {ECO:0000313|EMBL:EOY07018.1}
TAIRAT4G103200tRNA synthetase class I (I, L, M and V) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020010771511126326-
Transcript Sequence

Network for GWHGAAEX007062

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00133.21tRNA-synt_1186702.40E-214
PF08264.12Anticodon_17268757.80E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01870IARS, ileS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0006428Biological Processisoleucyl-tRNA aminoacylation
GO:0002161Molecular Functionaminoacyl-tRNA editing activity
GO:0000049Molecular FunctiontRNA binding
GO:0004822Molecular Functionisoleucine-tRNA ligase activity
GO:0000166Molecular Functionnucleotide binding
GO:0005524Molecular FunctionATP binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms116.490
SRR2545915Juvenile tuber132.040
SRP108465SRR5643513five period of Gastrodia elata64.960
SRR5643514five period of Gastrodia elata51.720
SRR5643515five period of Gastrodia elata54.180
SRR5643524five period of Gastrodia elata49.220
SRR5643525five period of Gastrodia elata42.090
SRR5643528five period of Gastrodia elata35.410
SRR5643658five period of Gastrodia elata42.100
SRR5643659five period of Gastrodia elata89.000
SRR5643660five period of Gastrodia elata97.760
SRR5643661five period of Gastrodia elata86.410
SRR5643662five period of Gastrodia elata87.110
SRR5643663five period of Gastrodia elata91.300
SRR5643664five period of Gastrodia elata99.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_185.580
SRR6049655Rhizomagastrodiae_C368-T10_good_160.870
SRR6049656Rhizomagastrodiae_C368-T07_good_179.700
SRR6049657Rhizomagastrodiae_C368-T07_good_191.700
SRR6049658Rhizomagastrodiae_C368-T04_good_195.390
SRR6049659Rhizomagastrodiae_C368-T04_good_199.020
SRR6049660Rhizomagastrodiae_C368-T01_good_177.670
SRR6049661Rhizomagastrodiae_C368-T04_good_191.450
SRR6049662Rhizomagastrodiae_C368-T01_good_167.150
SRR6049663Rhizomagastrodiae_C368-T01_good_172.570
SRR6049664Rhizomagastrodiae_C368-T10_good_161.980
SRR6049665Rhizomagastrodiae_C368-T10_good_161.980
SRP279888GastroGastrodia elata tuber 116.82
JuvenJuvenile tuber126.49
Mother_GastroMother tuber of Gastrodia elata 48.09
Mother_JuvenMother tuber of Juvenile 97.22