Detail information of GWHGAAEX007063/evm.TU.scaffold_195.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15668420|ref|NP_247216.1| | 3.00E-15 | 30S ribosomal protein S17e [Methanocaldococcus jannaschii DSM 2661] |
| KOG | KOG0187 | 5.00E-73 | 40S ribosomal protein S17 |
| nr | gi|672120566|ref|XP_008783554.1| | 4.34E-78 | PREDICTED: 40S ribosomal protein S17-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SQZ1|RS173_ARATH | 1.00E-73 | 40S ribosomal protein S17-3 |
| trEMBL | tr|M0RVY9|M0RVY9_MUSAM | 8.00E-77 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P00810_001} |
| TAIR | AT3G10610 | 5.00E-73 | Ribosomal S17 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000200 | 1193569 | 1194472 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007063
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00833.17 | Ribosomal_S17e | 1 | 117 | 7.80E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02962 | RP-S17e, RPS17 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.590 |
| SRR2545915 | Juvenile tuber | 46.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 111.570 |
| SRR5643514 | five period of Gastrodia elata | 134.500 | |
| SRR5643515 | five period of Gastrodia elata | 104.980 | |
| SRR5643524 | five period of Gastrodia elata | 116.100 | |
| SRR5643525 | five period of Gastrodia elata | 76.320 | |
| SRR5643528 | five period of Gastrodia elata | 58.320 | |
| SRR5643658 | five period of Gastrodia elata | 50.520 | |
| SRR5643659 | five period of Gastrodia elata | 128.950 | |
| SRR5643660 | five period of Gastrodia elata | 129.070 | |
| SRR5643661 | five period of Gastrodia elata | 132.430 | |
| SRR5643662 | five period of Gastrodia elata | 157.890 | |
| SRR5643663 | five period of Gastrodia elata | 131.450 | |
| SRR5643664 | five period of Gastrodia elata | 146.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 91.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 69.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 101.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 76.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 62.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 50.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 75.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 90.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 83.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 138.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 138.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 176.24 |
| Juven | Juvenile tuber | 156.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 89.52 | |
| Mother_Juven | Mother tuber of Juvenile | 85.02 |