Detail information of GWHGAAEX007066/evm.TU.scaffold_195.51


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03041.00E-149mRNA deadenylase subunit
nrgi|695058275|ref|XP_009417447.1|1.13E-169PREDICTED: probable CCR4-associated factor 1 homolog 7 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SKZ2|CAF1G_ARATH1.00E-156Probable CCR4-associated factor 1 homolog 7
trEMBLtr|M0TZY5|M0TZY5_MUSAM4.00E-170Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P13270_001}
TAIRAT1G807801.00E-149Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020012733161278372-
Transcript Sequence

Network for GWHGAAEX007066

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04857.19CAF1151371.90E-08
PF04857.19CAF11622436.80E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12581CNOT7_8, CAF1, POP2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms564.550
SRR2545915Juvenile tuber388.860
SRP108465SRR5643513five period of Gastrodia elata56.050
SRR5643514five period of Gastrodia elata47.400
SRR5643515five period of Gastrodia elata45.760
SRR5643524five period of Gastrodia elata41.060
SRR5643525five period of Gastrodia elata55.250
SRR5643528five period of Gastrodia elata49.430
SRR5643658five period of Gastrodia elata68.130
SRR5643659five period of Gastrodia elata133.110
SRR5643660five period of Gastrodia elata250.200
SRR5643661five period of Gastrodia elata134.330
SRR5643662five period of Gastrodia elata206.720
SRR5643663five period of Gastrodia elata198.570
SRR5643664five period of Gastrodia elata333.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1157.870
SRR6049655Rhizomagastrodiae_C368-T10_good_168.630
SRR6049656Rhizomagastrodiae_C368-T07_good_187.090
SRR6049657Rhizomagastrodiae_C368-T07_good_1186.470
SRR6049658Rhizomagastrodiae_C368-T04_good_185.660
SRR6049659Rhizomagastrodiae_C368-T04_good_1106.080
SRR6049660Rhizomagastrodiae_C368-T01_good_1113.860
SRR6049661Rhizomagastrodiae_C368-T04_good_178.320
SRR6049662Rhizomagastrodiae_C368-T01_good_156.310
SRR6049663Rhizomagastrodiae_C368-T01_good_150.350
SRR6049664Rhizomagastrodiae_C368-T10_good_154.570
SRR6049665Rhizomagastrodiae_C368-T10_good_154.570
SRP279888GastroGastrodia elata tuber 78.40
JuvenJuvenile tuber89.64
Mother_GastroMother tuber of Gastrodia elata 42.53
Mother_JuvenMother tuber of Juvenile 59.45