Detail information of GWHGAAEX007070/evm.TU.scaffold_195.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392408183|ref|YP_006444791.1| | 8.00E-17 | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Anaerobaculum mobile DSM 13181] |
| KOG | KOG1601 | 2.00E-113 | GATA-4/5/6 transcription factors |
| nr | gi|743857490|ref|XP_010942127.1| | 0 | PREDICTED: two-component response regulator ARR12-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|P62598|ARR12_ARATH | 6.00E-114 | Two-component response regulator ARR12 |
| trEMBL | tr|M0RFT1|M0RFT1_MUSAM | 3.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P06040_001} |
| TAIR | AT2G25180 | 2.00E-113 | response regulator 12 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000200 | 1416353 | 1422400 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007070
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00072.23 | Response_reg | 29 | 138 | 5.60E-23 |
| PF00249.30 | Myb_DNA-binding | 214 | 264 | 1.00E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GARP-ARR-B |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14491 | ARR-B | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007165 | Biological Process | signal transduction |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 73.240 |
| SRR2545915 | Juvenile tuber | 39.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 52.240 |
| SRR5643514 | five period of Gastrodia elata | 52.260 | |
| SRR5643515 | five period of Gastrodia elata | 39.430 | |
| SRR5643524 | five period of Gastrodia elata | 44.050 | |
| SRR5643525 | five period of Gastrodia elata | 17.220 | |
| SRR5643528 | five period of Gastrodia elata | 10.020 | |
| SRR5643658 | five period of Gastrodia elata | 16.550 | |
| SRR5643659 | five period of Gastrodia elata | 23.650 | |
| SRR5643660 | five period of Gastrodia elata | 23.290 | |
| SRR5643661 | five period of Gastrodia elata | 19.510 | |
| SRR5643662 | five period of Gastrodia elata | 18.190 | |
| SRR5643663 | five period of Gastrodia elata | 22.510 | |
| SRR5643664 | five period of Gastrodia elata | 23.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 66.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 63.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 47.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 47.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.39 |
| Juven | Juvenile tuber | 86.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.06 | |
| Mother_Juven | Mother tuber of Juvenile | 58.30 |