Detail information of GWHGAAEX007076/evm.TU.scaffold_196.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|219848715|ref|YP_002463148.1|1.00E-12NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485]
KOGKOG17880Uncharacterized conserved protein
nrgi|743774535|ref|XP_010917623.1|0PREDICTED: BEACH domain-containing protein lvsA isoform X1 [Elaeis guineensis]
Swissprottr|A8ILK1|CFA52_CHLRE2.00E-06Cilia- and flagella-associated protein 52 {ECO:0000305}
trEMBLtr|A0A061DX95|A0A061DX95_THECC0Beige/BEACH domain,WD domain, G-beta repeat protein {ECO:0000313|EMBL:EOX94628.1}
TAIRAT1G03060_10Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000190271851307699-
Transcript Sequence

Network for GWHGAAEX007076

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14844.5PH_BEACH289329411.80E-06
PF02138.17Beach298032599.20E-121
PF00400.31WD40334433730.0036
PF00400.31WD40338234182.50E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms63.940
SRR2545915Juvenile tuber18.260
SRP108465SRR5643513five period of Gastrodia elata11.710
SRR5643514five period of Gastrodia elata11.780
SRR5643515five period of Gastrodia elata14.010
SRR5643524five period of Gastrodia elata12.910
SRR5643525five period of Gastrodia elata14.780
SRR5643528five period of Gastrodia elata13.190
SRR5643658five period of Gastrodia elata12.330
SRR5643659five period of Gastrodia elata12.970
SRR5643660five period of Gastrodia elata16.640
SRR5643661five period of Gastrodia elata14.240
SRR5643662five period of Gastrodia elata11.730
SRR5643663five period of Gastrodia elata12.410
SRR5643664five period of Gastrodia elata16.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.190
SRR6049655Rhizomagastrodiae_C368-T10_good_111.490
SRR6049656Rhizomagastrodiae_C368-T07_good_115.180
SRR6049657Rhizomagastrodiae_C368-T07_good_117.280
SRR6049658Rhizomagastrodiae_C368-T04_good_124.150
SRR6049659Rhizomagastrodiae_C368-T04_good_127.660
SRR6049660Rhizomagastrodiae_C368-T01_good_119.630
SRR6049661Rhizomagastrodiae_C368-T04_good_122.060
SRR6049662Rhizomagastrodiae_C368-T01_good_112.470
SRR6049663Rhizomagastrodiae_C368-T01_good_116.740
SRR6049664Rhizomagastrodiae_C368-T10_good_114.550
SRR6049665Rhizomagastrodiae_C368-T10_good_114.550
SRP279888GastroGastrodia elata tuber 13.54
JuvenJuvenile tuber22.55
Mother_GastroMother tuber of Gastrodia elata 32.03
Mother_JuvenMother tuber of Juvenile 70.90