Detail information of GWHGAAEX007079/evm.TU.scaffold_196.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 5.00E-81 | Heat shock transcription factor |
| nr | gi|672188098|ref|XP_008813499.1| | 3.67E-94 | PREDICTED: heat stress transcription factor A-2b-like [Phoenix dactylifera] |
| Swissprot | tr|Q6VBB2|HFA2B_ORYSJ | 7.00E-93 | Heat stress transcription factor A-2b |
| trEMBL | tr|M5W4S9|M5W4S9_PRUPE | 5.00E-93 | Uncharacterized protein {ECO:0000313|EMBL:EMJ01795.1} |
| TAIR | AT3G22830 | 5.00E-81 | heat shock transcription factor A6B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000190 | 606431 | 610286 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007079
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 34 | 123 | 3.00E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.870 |
| SRR2545915 | Juvenile tuber | 82.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.250 |
| SRR5643514 | five period of Gastrodia elata | 0.400 | |
| SRR5643515 | five period of Gastrodia elata | 0.730 | |
| SRR5643524 | five period of Gastrodia elata | 0.290 | |
| SRR5643525 | five period of Gastrodia elata | 17.420 | |
| SRR5643528 | five period of Gastrodia elata | 34.470 | |
| SRR5643658 | five period of Gastrodia elata | 2.300 | |
| SRR5643659 | five period of Gastrodia elata | 0.690 | |
| SRR5643660 | five period of Gastrodia elata | 0.590 | |
| SRR5643661 | five period of Gastrodia elata | 0.970 | |
| SRR5643662 | five period of Gastrodia elata | 2.340 | |
| SRR5643663 | five period of Gastrodia elata | 1.260 | |
| SRR5643664 | five period of Gastrodia elata | 50.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.09 |
| Juven | Juvenile tuber | 1.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.77 | |
| Mother_Juven | Mother tuber of Juvenile | 2.70 |