Detail information of GWHGAAEX007082/evm.TU.scaffold_196.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|326801077|ref|YP_004318896.1| | 1.00E-76 | fatty acid desaturase [Sphingobacterium sp. 21] |
| KOG | KOG2987 | 8.00E-175 | Fatty acid desaturase |
| nr | gi|604315254|gb|EYU27960.1| | 0 | hypothetical protein MIMGU_mgv1a009682mg [Erythranthe guttata] |
| Swissprot | tr|Q6H5U3|DES1L_ORYSJ | 0 | Sphingolipid delta(4)-desaturase DES1-like |
| trEMBL | tr|A0A022QND1|A0A022QND1_ERYGU | 0 | Uncharacterized protein {ECO:0000313|EMBL:EYU27960.1} |
| TAIR | AT4G04930 | 8.00E-175 | fatty acid desaturase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000190 | 850534 | 851816 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007082
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08557.9 | Lipid_DES | 17 | 50 | 3.30E-19 |
| PF00487.23 | FA_desaturase | 74 | 292 | 2.30E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04712 | DEGS | Metabolic pathways | map01100 |
| Sphingolipid metabolism | map00600 | ||
| Sphingolipid signaling pathway | map04071 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0030148 | Biological Process | sphingolipid biosynthetic process |
| GO:0042284 | Molecular Function | sphingolipid delta-4 desaturase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.470 |
| SRR2545915 | Juvenile tuber | 0.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.070 |
| SRR5643514 | five period of Gastrodia elata | 0.110 | |
| SRR5643515 | five period of Gastrodia elata | 0.330 | |
| SRR5643524 | five period of Gastrodia elata | 0.230 | |
| SRR5643525 | five period of Gastrodia elata | 0.210 | |
| SRR5643528 | five period of Gastrodia elata | 0.210 | |
| SRR5643658 | five period of Gastrodia elata | 0.050 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.060 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.060 | |
| SRR5643663 | five period of Gastrodia elata | 0.050 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.52 |
| Juven | Juvenile tuber | 0.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 135.93 | |
| Mother_Juven | Mother tuber of Juvenile | 2.01 |