Gene detail

Detail information of GWHGAAEX007087/evm.TU.scaffold_196.23

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15613354\|ref\|NP_241657.1\|	7.00E-06	alpha-mannosidase [Bacillus halodurans C-125]
KOG	KOG1959	0	Glycosyl hydrolase, family 38 - alpha-mannosidase
nr	gi\|672129831\|ref\|XP_008788433.1\|	0	PREDICTED: lysosomal alpha-mannosidase-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|C0HJB3\|MANA_CANEN	0	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|M0U935\|M0U935_MUSAM	0	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}
TAIR	AT5G66150	0	Glycosyl hydrolase family 38 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000190	1134510	1209999	-

Transcript Sequence
>GWHTAAEX007087 GCGAAGGAAGGCAAATGAAGCTCCAAATATACACATGTCAGTGTAATATTTGCATTCGGCAGTGTTTTGAAATAGCCACGCTCTGAATTGTCGTCACCCTCATTCCACTGCTAGTTGCTAAAAAGAGGCTCAGACTGGGAACACCTCTTTCCACATCTCTCCATCTATTTCTTATATAAATTCTTACCTTCTAACCACGATCGTTGATGCTCAGCTTTGAAGTCTGAATCTTTCCCTCGGCCGACACGATGGGGTCGTCCTCGTTGAGTTCAGTTTCATTACTATTGGTATCTATCTTCTTCGCGGGCGTTAGGGCAGGCTTTATCCAGTACAATACCAGCGCGGGCATAGTCGATGGGAAACTCAATGTTCATCTTGTACCTCACAGTCACGATGATGTAGGTTGGCTGAAGACGGTAGACCAGTACTATGTCGGATCTCATAATAAAATACAGGGTGGTTGTGTTGCCAATGTGTTGGACTCTGTGGTCGTTGCGTTGCTCAAAGATCCAAACAGGAAGTTTGTTTATGTCGAGCAGGCTTTTTTCCAAAGATGGTGGGCCGAACAAAATGGAGCAACCCAAGAAGTGGTAAAAAGGCTGGTGAATTCTGGTCAACTGGAGTTCATAAATGGTGGTTGGTGTATGCATGATGAAGCAGCAGTTCATTATGTTGATATGATTGATCAAACTTCTCTCGGTCATCGCATGATAAAGCGACAATTTAACAAGATTCCTCGAATTGGTTGGCAGATTGATTCATTTGGACACTCTGCTGTGCAAGGTTATTTACTTGGCGCTGAGCTTGGATTCGACTCTATATTCTTTGCAAGGATAGATTACCAGGACAGACAAAAACGTAAGATGAGCAAATCTCTTGAAGTCATTTGGCATGGTTCTAGAACTTTCGGCTCTTCCTCCCAGATTTTTGCAAGTGCCTTTCCTGTGCATTACAGCCCTCCAGATGGATTTCATTTTGAAGTCAATGATAATTATGCTCCTGTCCAGGATGATCCTTTTCTTTATGATTATAATGTAAATGAGCGAGTCAATGATTTTGTTGATGCTGCTTTAGCTCAGGCTAATGTGACACGAACAAATCATATTATGTGGACAATGGGGGATGATTTTCAATATCAATATGCTGAATCTTGGTTTAAGCAAATGGACAAACTTATCAATTATGTAAACCAGGATGGTCGTATTCATGCGTTGTATTCCACCCCATCAGTATACTCTGATGCAAAGTATGCTGCAAATGAATCTTGGCCATTGAAAACAGATGACTATTTCCCATATTCAGATGGCTCCAATTCTTATTGGACTGGTTATTATACCAGTCGGCCAGCATTTAAGCGGTTCGTTCGAGAATTAAGTGGATATTACCTGGCTGCACGTCAGCTGGAGTTTTTGGTAGGGAGAAAATCAGCTGGTCCAGTCACCTCTATCCTAGGAGATGCTTTAGGCATCGCTCAGCATCATGATGCTGTCTCTGGTACTTCAAAGCAAAATACAACAAACGACTATGCAAAACGCCTTGCATATGGAGCTTCTCAGGCAGAGATGGTTGTCAATCTTGCTATTCCTTGCCTTACTAATCCTGGAAAAAAATGTATCTCTTATTTGCCAACAATTAACCTGACCCAGTGCAATTTGCTCAACATAAGTTACTGCCCAGTTACTGAAGAAATGCTAAAAGGGAAGAGCTTAGTAATGGTAGTGTATAATTCTCTTGGATGGAATCGTAAAGAGTATATTAGAATTCCTGTTAATGACAATCTGTTGGTTGTACGGGATGCAAATGGAAATGCGATTGAGACTCAATTCATTGAGTTGGACAATACTACTATTAAAATTAGAAACTTATATGTCAAAGCATACCTTGGGGAGTTGTCTAAAGATGCTCCAAAATACTGGCTTATATTTGAAGTATTTGTGCCACCATTGGGATGGAATACTTACTTCTTATCAAAAAAAACCAAGCAAGCACCCAATAAAAATGCCCATACCCCAGCTATATCAGTACAAGATAATGATACTGTGGAGATAGGACCAGGACCTTTTAAAATGTCTTTCTCAGCATCATCTGGACAGCTGAAAAGGGTGGTGAACAGCAGAACAGGGATTGATTTACCGGTGCAACAAAGCTATCTTTGGTATTCTTCTAGTCAGGGTGACATTGAAGACTCACAGGCCTCTGGTGCTTACATTTTCCGGCCTATTGGTGCTTCTCCAGCTGCTGCTGCAAGATTGGTTACTCTAAAAGTCGTGAGGGGGCCTCTAGTTGATGAAGTTCATCAGCAGTTTAATTCGTGGATTTATCAGGTCACAAGAATATACAAGGACAAGGAAAGTGCTGAATTTGAGTTTACTATTGGTCCAATCCCAACTGATGATGGCGTTGGAAAGGAGGTTATTACCCGATTAACAGCAAATATGGTCACAAATAAAAAATTCTATACCGACTCCAATGGAAGAGATTTCCTTGAACGTGCCCGAGATTATAGAGAGGATTGGAATCTTACGGTAACCCAACCAATTGCAGGGAATTATTATCCGCTTAACCTGGGAATTTATATAGAAGATGGGAAGTACGAGCTCTCTGTACTTGTGGATAGTGCTTGCGGAGGCTCTAGCATTCAAGATGGTCAAGTAGAGGTCATGCTTCATAGGCGCCTTCTTGCAGATGACGGGAGAGGTGTCAGTGAAGCCCTTGATGAGATGGTTTGTACGGATTATGGCTGTGAGGGTCTCACGACAAGGGGGAAGTATCACATGAGCATCAACCAATTGGGAAGTGGTGCAATTTGGCGCCGAACGAGCGGCCAACAGATATACTCACCTGTTCTTCTCGCATTTACTCATGAGAATGAGAGAAATTGGAAATCTTCTCAAATTACAAAGGCTACTTCTATGGATCCAAATTATAGCTTACCTCCAAATGTTGCACTCATCACACTTGAGGAATTAGATGATGGCACTGTACTTCTTCGTTTGGCACATTTATATGAGGCTAGTGAGGATATTCTGAATTCTGTGTTGGCTGAGGTGGATCTAAAGAAGGTCTTTGCTGGAAAAATGATTAAGGAACTGCAAGAAACAAATTTATCAGCAAATCAAAACAAATGGGAAATGAAGAGAAGGAATTGGAGGGTTGAAGGAGACAGTGCTACTCAACCAACTCCTCCACTCAGAGGCAGGCCTGTCGATAATTCCACCTTAATTGTGGAGTTAGGTCCAATGGAAATTCGCACCTTCTTGTTGAGATTCTAAGACCAACTTCAAATAGCATCTTCTATTCTTGTTGTAATATTTATGGCTGAATCTCTTATCTTGAAGCCTTTTTGGTTTAACATACTTGTCACTGACTACTATATATATATATATATCAATCATCTAATTTTAAAGGATGTTACAAGGGTAGGGCTATGCGAAGATTGAAGCAAAGCGTGGGAATGGGTGTTTTGGTGGGGTTTGGACGGAGTGATGCAGTGCAAGGGCACAAAGGCTTAGGCCTGTACAGGAGCCTGGGATGACACCATAATCTGTTGCTTTAATAGCACATCCTTACCCTTGCTGATGCCTCGCCCATCACTTTGCTCAGCTTGGCTGTCAAGTTCGCCCTAACACTTAGTTCAAGAAGCGGTTTGACCGGTGCATCTTCGATCACAGCCTTCTCTTTAATATTATTGAAGCATCATAAAGGCCTATACGGGTGTGTGATGACATGTGCGTATGCGATGAGCTTGGGAGTTGGAGTGCTTGAATGCTTCATGTTTAAGCTATTGTAGGGTTATGACAAGTGACGTCGTATTTGGTTATGTTGTACATGTGGATTATATATATTTGTTATTCTAGTATTTCTGATATTATTAACGCTGTGATAGTATTCTTATTTAGAAATGTATCAGATCATCTAGGAAGTTGTAACATGCTTTTTTTTTGTATTTTAGCATTGCTATGTTATGGTTGGGGTTGCTGTATATCTTGGTTGTAAACTTAATAAAATTTGCTTTCAAAATTTTAGTTTGAGTTCTTAGTTTTGGTACAATCAAAAATCTTTATTGGTGTGTATAATTAAGGGCTTCAGGGTGTGTATTTC

Network for GWHGAAEX007087

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01074.21	Glyco_hydro_38	40	351	4.90E-91
PF09261.10	Alpha-mann_mid	357	430	2.20E-17
PF07748.12	Glyco_hydro_38C	489	1004	2.30E-100

Protein Sequence

>GWHPAAEX007087
MGSSSLSSVSLLLVSIFFAGVRAGFIQYNTSAGIVDGKLNVHLVPHSHDDVGWLKTVDQYYVGSHNKIQGGCVANVLDSVVVALLKDPNRKFVYVEQAFFQRWWAEQNGATQEVVKRLVNSGQLEFINGGWCMHDEAAVHYVDMIDQTSLGHRMIKRQFNKIPRIGWQIDSFGHSAVQGYLLGAELGFDSIFFARIDYQDRQKRKMSKSLEVIWHGSRTFGSSSQIFASAFPVHYSPPDGFHFEVNDNYAPVQDDPFLYDYNVNERVNDFVDAALAQANVTRTNHIMWTMGDDFQYQYAESWFKQMDKLINYVNQDGRIHALYSTPSVYSDAKYAANESWPLKTDDYFPYSDGSNSYWTGYYTSRPAFKRFVRELSGYYLAARQLEFLVGRKSAGPVTSILGDALGIAQHHDAVSGTSKQNTTNDYAKRLAYGASQAEMVVNLAIPCLTNPGKKCISYLPTINLTQCNLLNISYCPVTEEMLKGKSLVMVVYNSLGWNRKEYIRIPVNDNLLVVRDANGNAIETQFIELDNTTIKIRNLYVKAYLGELSKDAPKYWLIFEVFVPPLGWNTYFLSKKTKQAPNKNAHTPAISVQDNDTVEIGPGPFKMSFSASSGQLKRVVNSRTGIDLPVQQSYLWYSSSQGDIEDSQASGAYIFRPIGASPAAAARLVTLKVVRGPLVDEVHQQFNSWIYQVTRIYKDKESAEFEFTIGPIPTDDGVGKEVITRLTANMVTNKKFYTDSNGRDFLERARDYREDWNLTVTQPIAGNYYPLNLGIYIEDGKYELSVLVDSACGGSSIQDGQVEVMLHRRLLADDGRGVSEALDEMVCTDYGCEGLTTRGKYHMSINQLGSGAIWRRTSGQQIYSPVLLAFTHENERNWKSSQITKATSMDPNYSLPPNVALITLEELDDGTVLLRLAHLYEASEDILNSVLAEVDLKKVFAGKMIKELQETNLSANQNKWEMKRRNWRVEGDSATQPTPPLRGRPVDNSTLIVELGPMEIRTFLLRF

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH38

KEGG pathway

KO	Enzyme	pathway	mapID
K01191	MAN2C1	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0006013	Biological Process	mannose metabolic process
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0003824	Molecular Function	catalytic activity
GO:0030246	Molecular Function	carbohydrate binding
GO:0004559	Molecular Function	alpha-mannosidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.750
SRP064423	SRR2545915	Juvenile tuber	43.500
SRP108465	SRR5643513	five period of Gastrodia elata	37.190
	SRR5643514	five period of Gastrodia elata	37.780
	SRR5643515	five period of Gastrodia elata	36.050
	SRR5643524	five period of Gastrodia elata	37.220
	SRR5643525	five period of Gastrodia elata	26.020
	SRR5643528	five period of Gastrodia elata	18.600
	SRR5643658	five period of Gastrodia elata	23.670
	SRR5643659	five period of Gastrodia elata	35.040
	SRR5643660	five period of Gastrodia elata	30.400
	SRR5643661	five period of Gastrodia elata	31.640
	SRR5643662	five period of Gastrodia elata	20.160
	SRR5643663	five period of Gastrodia elata	27.090
	SRR5643664	five period of Gastrodia elata	20.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	62.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	58.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	55.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	55.160
SRP279888	Gastro	Gastrodia elata tuber	23.80
	Juven	Juvenile tuber	30.34
	Mother_Gastro	Mother tuber of Gastrodia elata	26.81
	Mother_Juven	Mother tuber of Juvenile	33.48