Gene detail

Detail information of GWHGAAEX007093/evm.TU.scaffold_197.7

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2814	1.00E-118	Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family)
nr	gi\|743800388\|ref\|XP_010925912.1\|	1.64E-158	PREDICTED: uncharacterized protein LOC105048323 isoform X1 [Elaeis guineensis]
trEMBL	tr\|I1NLK7\|I1NLK7_ORYGL	1.00E-148	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA01G0074700.1}
TAIR	AT3G16230	1.00E-118	Predicted eukaryotic LigT

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000196	111428	174120	-

Transcript Sequence
>GWHTAAEX007093 TGAGATCCCTTTAAACACCTATTTTCTGCAATTCTCGTTCCTTAAATGTTAAGGCTTATGATGCACGTTCCATTTAAGTTAATTTATTGCAGTCTCAGCTAAAGTTCTTAGCCTTTGTAAGGTAGTCGTCTACCCTTTTAGAATTTTTGCAGATTGAACCGTCCGTCGAACACTGTTTCTGTGGCAATTGTTCTTTCTTTTCGTCACCACAATTTCCAGGATTATCTTTGTGTCAGAAGTTTAAGCAATTTTCCTATAATGGGTGGGAAGAAGAGAGGGCAAAGTTCTTTGGACAAATGCAAGAAGCAGAATAGTATACCAGTTTGGAGACCAGCCTCCACTGAGCCAGAACATATATCAAATTTCATTAAAACTTGTTCCACTATTCCCATTATGGATACCGTTAATATTGAAGATTCTGCACCAGATGAATCAACGGGTGTTTTGGCTGCAACCTTGGCTTCTCAGGTTGATGTTATTAGAGAAACTCCAACTTCCTCGAAGTTCAATGAAGATTCTGAGATTGTCAATAAGGGTGAAAAATGCCTGATTGCTATTCAGGTAGATGCTTCTTTGATCCGTTTTATAAAAGGAAAATGGGGATTGACACAAAAACAAATCGAGGGAGAAACAGGTGTGAAAATTATATTTCCATCTGTTAAGGGTGAAAGTTCTATTGTTATTGAAGGCGCGTCCATGGAAAATGTAACCAGAGCATCTGAAAAAATTACTAATATACTCGAGCAAGCAGTCAAAAGTCCAAATGTTGATTACTCCCATTTTGTATCTCTTCCGCTTGCTATCCACCCCGAATTGGTAAAGAGGCTGCACAGTTTTCAGAAAACTGTACTGGAAGAAATTAATTTGACGCCTGAAGGTGTCGTGGAAGGTAGTTCAAGGGATGATTCTTTAGATAATGCTGACGATTCCAATTTTCCAGAACATATCACAGTCAAGCTTGAAGTTCAAAACCATAATGAAGATGTGAGCTTAAATATTGATGCAGATGGCAAAATGTTGTCAAAACCAATTTCATCATCAGCATTGGGCATTGACAGATCCATATTTATTAAACCTCAAACTTTTCACTTGACTGTGCTTATGTTGAAACTGTGGAATAAGGACCTTGTTGCAATGGCTACTGAGACTCTTAAGGGAGTTTTTTCAAAAGTAATGGATGCTTTAGAAAATCAACCTGTTTCTATAAAGCTAAGAGGACTGGCTTGCCTGAAAGGTTCACCAGCTAGGGCCCATGTCATATATGCACCAATAGAGGAACTTGGTGGGGAAGGTCGCTTGATACGAGCTTGTCAAGTTATCATTGATGCTTTTGTGGAAGCTGGTCTTGTTCTTCAAAAGGACGCTCATCATTCTTTAAAGCTCCATGCCACCTTGATGAATATAAGACACAGAAAGAGAAAGAAGGGGGCTAGAAGGAATGATTCATTTAATGCACGAGATATTTTTAAGAGGTATGGTTCTAAAGATTGGGGTGAATATGTCCTTACGGAGGCACATCTTTCTCAGAGATTTACCTTTGATGAGAGTGGATACTACCATTGCTGTGCCTCTTTGCCTTTTCCTGGGAACAACAAGTAATTTTTCAAGTCTGTAATGCAGGCTGCATCTTGTTCTTGTGGATGTCTGGAGTTGTCCAGTTGCAAGCAAGTTGAAATTTAAATGAACGGCTCCATTGTAGGTTTACTTTTAAATGCGCTTTATAATGAGTAATGTAATTGCTGAGGCCGGCTTTAAAAAAAACAAAATTTATGAATAGATGGGCTCTTTCTGCTGATGTTATATTTGTCTTAATATGCTGTGCTGGCTAGCCCAATTAGCCTACTTATAAATACATTAAGCGAGAGAAAACCACCATTTTATCTTTTATGATTTGAAACATCTGTTGTCTTTAATTAATAAAATTTAAGGAATAAATTATTGAATTAGATATTCCTCCTAATGATTTATGTAGCACTTAATATTTATGCGGATACTTTCTATTTGATTTATTTCTTTTGTTATGTATGGTATTTTTGAATTTTTCTCTGTAAAACATTGTCGG

Network for GWHGAAEX007093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00013.28	KH_1	100	158	2.20E-08
PF10469.8	AKAP7_NLS	172	441	2.40E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	100.830
SRP064423	SRR2545915	Juvenile tuber	77.060
SRP108465	SRR5643513	five period of Gastrodia elata	24.510
	SRR5643514	five period of Gastrodia elata	26.610
	SRR5643515	five period of Gastrodia elata	25.520
	SRR5643524	five period of Gastrodia elata	24.570
	SRR5643525	five period of Gastrodia elata	28.510
	SRR5643528	five period of Gastrodia elata	28.940
	SRR5643658	five period of Gastrodia elata	23.810
	SRR5643659	five period of Gastrodia elata	64.050
	SRR5643660	five period of Gastrodia elata	70.470
	SRR5643661	five period of Gastrodia elata	41.590
	SRR5643662	five period of Gastrodia elata	61.080
	SRR5643663	five period of Gastrodia elata	70.460
	SRR5643664	five period of Gastrodia elata	71.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.090
SRP279888	Gastro	Gastrodia elata tuber	50.78
	Juven	Juvenile tuber	31.25
	Mother_Gastro	Mother tuber of Gastrodia elata	27.50
	Mother_Juven	Mother tuber of Juvenile	25.33