Detail information of GWHGAAEX007101/evm.TU.scaffold_197.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672119991|ref|XP_008783245.1|0PREDICTED: probable tocopherol cyclase, chloroplastic [Phoenix dactylifera]
Swissprottr|Q6K7V6|TOCC_ORYSJ0Probable tocopherol cyclase, chloroplastic (Precursor)
trEMBLtr|M0TRX8|M0TRX8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P19750_001}
TAIRAT4G327700tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000196617284705706+
Transcript Sequence

Network for GWHGAAEX007101

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14249.5Tocopherol_cycl964528.50E-144
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K09834VTE1, SXD1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130

Gene Ontology

GO term OntologyName
GO:0009976Molecular Functiontocopherol cyclase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.330
SRR2545915Juvenile tuber16.840
SRP108465SRR5643513five period of Gastrodia elata15.350
SRR5643514five period of Gastrodia elata14.690
SRR5643515five period of Gastrodia elata13.550
SRR5643524five period of Gastrodia elata14.230
SRR5643525five period of Gastrodia elata11.810
SRR5643528five period of Gastrodia elata8.680
SRR5643658five period of Gastrodia elata10.300
SRR5643659five period of Gastrodia elata14.600
SRR5643660five period of Gastrodia elata15.810
SRR5643661five period of Gastrodia elata15.620
SRR5643662five period of Gastrodia elata16.320
SRR5643663five period of Gastrodia elata15.270
SRR5643664five period of Gastrodia elata17.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.800
SRR6049655Rhizomagastrodiae_C368-T10_good_112.010
SRR6049656Rhizomagastrodiae_C368-T07_good_115.880
SRR6049657Rhizomagastrodiae_C368-T07_good_121.750
SRR6049658Rhizomagastrodiae_C368-T04_good_118.380
SRR6049659Rhizomagastrodiae_C368-T04_good_120.520
SRR6049660Rhizomagastrodiae_C368-T01_good_117.760
SRR6049661Rhizomagastrodiae_C368-T04_good_117.100
SRR6049662Rhizomagastrodiae_C368-T01_good_116.590
SRR6049663Rhizomagastrodiae_C368-T01_good_115.850
SRR6049664Rhizomagastrodiae_C368-T10_good_115.190
SRR6049665Rhizomagastrodiae_C368-T10_good_115.190
SRP279888GastroGastrodia elata tuber 17.42
JuvenJuvenile tuber24.46
Mother_GastroMother tuber of Gastrodia elata 14.38
Mother_JuvenMother tuber of Juvenile 21.45