Gene detail

Detail information of GWHGAAEX007108/evm.TU.scaffold_197.24

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0895	3.00E-124	Ubiquitin-conjugating enzyme
nr	gi\|672163287\|ref\|XP_008801486.1\|	0	PREDICTED: LOW QUALITY PROTEIN: probable ubiquitin-conjugating enzyme E2 24 [Phoenix dactylifera]
Swissprot	tr\|Q8VY10\|UBC24_ARATH	0	Probable ubiquitin-conjugating enzyme E2 24
trEMBL	tr\|M0TXY0\|M0TXY0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P06210_001}
TAIR	AT2G16920	3.00E-124	ubiquitin-conjugating enzyme 23

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000196	1016876	1049497	-

Transcript Sequence
>GWHTAAEX007108 ATGGATATGTTTTCTGATTCTGATTTTGAACACTACATTGATAGCAGCGACAATGAGGATCGTGATGGTATTGAATTAGCCTATAGTGAGCATGCTCAGAACATTTTATCATGCCTTGATGAGAGTTTAGAAAAGATAGATGATATTCTTGTATTCAAAAGGGGTTTTGTGCATGGTGATATAGTGTGTTCCATCAATGATGCTGCAAAGCAGCTAGGGCGAGTGGTGGATGTTGATATGTGTGTGGATCTGGAAACAAGCTTAGGCGAATTAATAAAAGATGTGAATAGCAGAAGCCTTGTTAGAGTATGTTCTTTTGCACCACGGGATTATGTGATCCATAGGCATTGGCTTGGACGTGTGAGAAGAATTTTTGATCGGGTAACTGTTCTGTTGAACAATGGTTCCAAATGTGAGATAAATGTACGAGATTCTGATGATTTAATGCCTTTGTTTCCTAACATATTCGAGGTTGAATCTCATCCTCTTTACTATCCAGGTCAGCGTGTAAGTGTTAAGCATCGCATCATTTCTGAAAAAGGAAAATGGGCGTGTGGCTCATGGGGAGCTGATCGAATTGATGCTACTATTTGCCATGTGGAAGTAGGTTTAGTTCATGTTAAATGGGTTACTTCACTTTTGTGCATGGGATGTAGTTCATCCCCTCCAGATCATCTTCAAGTTCCCGAGATGCTTACTTTACTTTCATGCTTCCCATATACTAATTGGCAGATAGGAGATTGCTGTACTTTGCCATTTGATTGTCAAAACTATACAAAGATGGCTGAAAAGGGGCCAGCAAGAAAAAAACATGTACACTTATCTGATGCCTCTCAGTTTGCAAGGATGCTGAAGTCAAGAATAAGTGGTCAACTTTGTAGAGAATTTTTTTCCATTGCAAAGACCAGAATCAAGGTTGATGTTTTATGGCAGAGTGGTCAGGTTTCTACTGGTGTCGATCCTGAAGCTTTGCTTCCTGTAAATAATATTGGAGAACATGATTTCTGGCCTGGACAATTTGTGGCGGAGAAGGTCACATATGAAGATGTACACGTCTTAAATGTCCAACGTTTAGGAGTTGTGAAGAGTGTGGAGTCACAGGAACAAATTGTGAAGGTGAAATGGATTACTGCTGAGCTTAAAAATAAAGCTGATTTTAGTAGGGATGCAGAGGAAATTGTTAGTGCATATGAGCTGATTGAGCATCCTGATGCTTCTTATTCATATTGTGATATTGTGATAAGGCTTCCAAATTGTGAAATCTTTGAGGGAAACACTCCCAATACTCATATTAGGGCTGACCTGGTCCAAGAACATGAAAACCTTTCCACCCGATGTGTACTAGCCTCCTCATACCTTCATACAAATGCCTGTAAGCAAAAAGTACACTCTTCTGGTTTGGATATTTGTCCTATTAGCTGTGCGGCTTGCATTGGATTTGTGATTGGTTTCAAGGATGCAAGGATAGAAGTGAAGTGGGCTAGCGGTCTCATTTCCAGTGTTCACCCTTATGAAATTGTCGGTTTGGATAGGCTTGATGACCTTAATTCACTGTCAACAACTCAAGATGTTGAAAATATGCAAGATGAGATATCCCAGCAAGTCAAATTGCAAGATAATGAGGTTGAAATTGATTCCAATGGCGGTTCCATTAGTGATTTGAGGGAGTCTGGTCTTCTTTTGCTTCCTTTAGCAGTGTTTAGATTTCTTACGAATATTGCTGAGAGGCTATTTGGCACAAGTGGTACTTCCAGATCATCTAACCAACAGTTGAGCAATTTGAATTGCCTAGATAAAACAGAGATCAACAAGCCTTCAGCAGATGGTGATGAACTGCAGTTTAATGGGTGGAAGGAGGCAGTGAATTATGAAGTAGAGAAGATTGAAAGATCGGCAGTTATGGTAGAATCTGAGAAATATTGGCAATTTAAACAGTTTGATAGTGTGTTTGACTGCTCTGACCATCATTTTTCAAATGGCATCAGCAATGATGCCACAACATTTCAGATTGAAAGTTGTTTATTGAAGAGGGTACACCAAGAATGGGGCATTCTTAAGAGTAACCTACCTGAAAGTATTTATGTTAGAGTTTATGAGGAGCGGATTGATCTTTTAAGGGTATCAATTGCTGGACAATCTGGAACACCTTATGATGGTGGCCTTTTTTTCTTCGATTTTCAATTGCCTAGCAATTATCCTCATGAACCTCCTCTTGTTCACTACCTTTCATGCGGCTTGAAACTGAACCCAAATCTGTATGAGTCGGGAATGATCTGTCTCAGCCTTCTGAATACATGGGCTGGCAGTGACACAGAAGTATGGAATCCAAATAGCTCTACCATACTTCAAGTTCTGCTGTCCCTTCAAGCTCTTGTTCTCAATGACAAGCCATATTTCAACGAAGCTGGTCATGATAAATACATAGGGAGAGCTGAGGCCGAAAGGTGCTCAATAAAGTACAATGAAAATGCTTTTCTCCTTACATGCAAATCAATGCTATGCATTTTGAAGCAACCACCTAAGCATTTTGAGGCGCTTGTAGAGGAGCATTTCGCCAAGCATGCAAGTGAGATCCTTCTATGCTGCACAGCCTACCTGAATGGTGCACAAGTCGGGACTTGCGCATCCAGAACGGGATCCGAGCATGGTTTAATGTGCAATTCAGCTGGTTTTAGAATCATGCTTGCAAAGATCTTCCCCAGGCTTGTTTCAAGCTTCACAGCAAAGGGAATTGATTGCAGCCAGTTCATAGACTGTTCTGATTCGTGA

Network for GWHGAAEX007108

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.25	UQ_con	677	804	4.60E-23

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10581	UBE2O	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.790
SRP064423	SRR2545915	Juvenile tuber	35.340
SRP108465	SRR5643513	five period of Gastrodia elata	27.550
	SRR5643514	five period of Gastrodia elata	29.450
	SRR5643515	five period of Gastrodia elata	23.440
	SRR5643524	five period of Gastrodia elata	31.770
	SRR5643525	five period of Gastrodia elata	16.960
	SRR5643528	five period of Gastrodia elata	13.300
	SRR5643658	five period of Gastrodia elata	20.940
	SRR5643659	five period of Gastrodia elata	12.100
	SRR5643660	five period of Gastrodia elata	13.120
	SRR5643661	five period of Gastrodia elata	11.240
	SRR5643662	five period of Gastrodia elata	12.470
	SRR5643663	five period of Gastrodia elata	12.850
	SRR5643664	five period of Gastrodia elata	11.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.350
SRP279888	Gastro	Gastrodia elata tuber	19.06
	Juven	Juvenile tuber	22.17
	Mother_Gastro	Mother tuber of Gastrodia elata	24.02
	Mother_Juven	Mother tuber of Juvenile	27.33