Detail information of GWHGAAEX007112/evm.TU.scaffold_197.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297567524|ref|YP_003686496.1|4.00E-38MIP family channel protein [Meiothermus silvanus DSM 9946]
KOGKOG02236.00E-121Aquaporin (major intrinsic protein family)
nrgi|75288436|sp|Q5Z6F0.1|TIP22_ORYSJ1.91E-128RecName: Full=Probable aquaporin TIP2-2; AltName: Full=Tonoplast intrinsic protein 2-2; Short=OsTIP2;2 [Oryza sativa Japonica Group]
Swissprottr|Q5Z6F0|TIP22_ORYSJ9.00E-131Probable aquaporin TIP2-2
trEMBLtr|B7EMA5|B7EMA5_ORYSJ7.00E-129cDNA clone:J033044F19, full insert sequence {ECO:0000313|EMBL:BAG93502.1}
TAIRAT3G162406.00E-121delta tonoplast integral protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000019612816161284261-
Transcript Sequence

Network for GWHGAAEX007112

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00230.19MIP152321.10E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0015267Molecular Functionchannel activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.450
SRR2545915Juvenile tuber17.140
SRP108465SRR5643513five period of Gastrodia elata14.020
SRR5643514five period of Gastrodia elata13.520
SRR5643515five period of Gastrodia elata13.170
SRR5643524five period of Gastrodia elata8.950
SRR5643525five period of Gastrodia elata17.920
SRR5643528five period of Gastrodia elata6.400
SRR5643658five period of Gastrodia elata8.160
SRR5643659five period of Gastrodia elata22.180
SRR5643660five period of Gastrodia elata16.260
SRR5643661five period of Gastrodia elata20.650
SRR5643662five period of Gastrodia elata27.290
SRR5643663five period of Gastrodia elata33.540
SRR5643664five period of Gastrodia elata21.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_148.450
SRR6049655Rhizomagastrodiae_C368-T10_good_120.170
SRR6049656Rhizomagastrodiae_C368-T07_good_128.760
SRR6049657Rhizomagastrodiae_C368-T07_good_130.070
SRR6049658Rhizomagastrodiae_C368-T04_good_113.730
SRR6049659Rhizomagastrodiae_C368-T04_good_18.390
SRR6049660Rhizomagastrodiae_C368-T01_good_110.660
SRR6049661Rhizomagastrodiae_C368-T04_good_123.970
SRR6049662Rhizomagastrodiae_C368-T01_good_122.480
SRR6049663Rhizomagastrodiae_C368-T01_good_15.160
SRR6049664Rhizomagastrodiae_C368-T10_good_125.960
SRR6049665Rhizomagastrodiae_C368-T10_good_125.960
SRP279888GastroGastrodia elata tuber 31.06
JuvenJuvenile tuber21.70
Mother_GastroMother tuber of Gastrodia elata 0.46
Mother_JuvenMother tuber of Juvenile 7.14