Detail information of GWHGAAEX007113/evm.TU.scaffold_197.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434394291|ref|YP_007129238.1| | 2.00E-16 | glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428] |
| nr | gi|449433187|ref|XP_004134379.1| | 0 | PREDICTED: cellulose synthase-like protein D1-like [Cucumis sativus] |
| Swissprot | tr|O49323|CSLD1_ARATH | 0 | Cellulose synthase-like protein D1 |
| trEMBL | tr|A0A0A0L4Q8|A0A0A0L4Q8_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN56753.1} |
| TAIR | AT2G33100 | 0 | cellulose synthase-like D1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000196 | 1306153 | 1310452 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007113
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03552.13 | Cellulose_synt | 270 | 1023 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.050 |
| SRR2545915 | Juvenile tuber | 0.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.650 |
| SRR5643514 | five period of Gastrodia elata | 0.300 | |
| SRR5643515 | five period of Gastrodia elata | 1.560 | |
| SRR5643524 | five period of Gastrodia elata | 0.570 | |
| SRR5643525 | five period of Gastrodia elata | 4.300 | |
| SRR5643528 | five period of Gastrodia elata | 2.790 | |
| SRR5643658 | five period of Gastrodia elata | 3.160 | |
| SRR5643659 | five period of Gastrodia elata | 2.380 | |
| SRR5643660 | five period of Gastrodia elata | 0.550 | |
| SRR5643661 | five period of Gastrodia elata | 1.350 | |
| SRR5643662 | five period of Gastrodia elata | 1.550 | |
| SRR5643663 | five period of Gastrodia elata | 3.690 | |
| SRR5643664 | five period of Gastrodia elata | 5.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.32 |
| Juven | Juvenile tuber | 0.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.27 | |
| Mother_Juven | Mother tuber of Juvenile | 0.18 |