Detail information of GWHGAAEX007114/evm.TU.scaffold_197.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166310|ref|YP_003404589.1| | 5.00E-57 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| nr | gi|672161340|ref|XP_008800482.1| | 0 | PREDICTED: pectinesterase-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P83948|PME3_CITSI | 0 | Pectinesterase 3 (Precursor) |
| trEMBL | tr|H6WYP0|H6WYP0_GOSHI | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT3G14310 | 0 | pectin methylesterase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000196 | 1317094 | 1320275 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007114
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 33 | 192 | 2.60E-23 |
| PF01095.18 | Pectinesterase | 240 | 536 | 1.80E-146 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.270 |
| SRR2545915 | Juvenile tuber | 32.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 86.930 |
| SRR5643514 | five period of Gastrodia elata | 38.170 | |
| SRR5643515 | five period of Gastrodia elata | 70.890 | |
| SRR5643524 | five period of Gastrodia elata | 44.910 | |
| SRR5643525 | five period of Gastrodia elata | 20.660 | |
| SRR5643528 | five period of Gastrodia elata | 47.920 | |
| SRR5643658 | five period of Gastrodia elata | 34.790 | |
| SRR5643659 | five period of Gastrodia elata | 90.220 | |
| SRR5643660 | five period of Gastrodia elata | 58.430 | |
| SRR5643661 | five period of Gastrodia elata | 104.090 | |
| SRR5643662 | five period of Gastrodia elata | 156.930 | |
| SRR5643663 | five period of Gastrodia elata | 159.030 | |
| SRR5643664 | five period of Gastrodia elata | 85.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 56.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 85.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 77.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 77.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.36 |
| Juven | Juvenile tuber | 13.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.23 | |
| Mother_Juven | Mother tuber of Juvenile | 14.18 |