Gene detail

Detail information of GWHGAAEX007115/evm.TU.scaffold_197.30

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2188	Predicted RNA-binding protein, contains Pumilio domains
nr	gi\|672108099\|ref\|XP_008783356.1\|	PREDICTED: pumilio homolog 23 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9C552\|PUM23_ARATH	Pumilio homolog 23
trEMBL	tr\|M0T5Y2\|M0T5Y2_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P10830_001}
TAIR	AT1G72320	pumilio 23

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000196	1331390	1372094	+

Transcript Sequence
>GWHTAAEX007115 GAATAAACATACTTATCCCGACTTTGCAGCTCGTTTTGCTTACACATTTGGGGTAGAAAATTTCAACATCCAGCATATCTTGACTCTGGCAACAATCAGTCAGCAATTAAAGTGAGCCAGAATTAACATTTTGGTCAAGATGCGCAAAGAGAATTCATCCAAGAAAAGGGAGCATAAAATGAACAAGAAAAGAAATCATGACAAGGCACATCTCAATATTTCTCAGAATGATACATCTGAACAAAGGGACAGTAGAATGGTTAAGCATAAGCAATCAAGAAAAAATCTCAGTGTGACTAGTGATGATTTTTCCATCAACTTGCATAAAAGGATGATAGTTGAAAACTCTGTACTACATAACCAACCTTCCAAGGGACATGCAACTCCACTCAGGAAAATTGTTGATCCAGAAACTGCAAAGTATTTTTTAGAAATTGCTAATTTGTTTGAGAATAATGGGGTTGACATTGATGTGCGCCGAACTATATGTGGCAATGCCTTGGAAGAAACTAGAGGAAAAGAATTTGAACTTGCAACTGATATGATTACAAGTCGAACCTTGCAATGTCTTCTTGAAGGATGTGATTTGGAACAACTCTGTTCTTTTCTTATTAACAGTGCAAAGGACTTCCCTTCCATGGCAGTTGATAAGTATGGATCTCATGTTGCTGAGACAGCACTGAAATCTCTAGCCGTGCATCTTCAAGTGGAACAATCATATTCTTTAGTTGAAGAGACATTTCATAAGATATGCCAGGTAGTTGGTGCTGATTCTATCAGCATAATGAGCAATCGCTATGGATCTCATGTCCTTCGGAGTCTTCTTTGCTTATGCATGGGTGTCCCATCTGGTGCCCTGGATGAATTTCACATCACCAAGCCTTCTTCTATCTTTGCAGAGAGGTTGAATTGTATGCCAGATCAACTTGGAGGTAACATTCGCAGAAATGTTCAGAATAGTTTTCCAGACACATTTAAATTTCTTGTCCGGGAAATTCTTAGTAGTGCCAAAGATGAGATTTCAACTCTGAGGACTGAAAAATATAGCAGCTTTGTCTTACAGTGTCTGTTGAAGTTATCAGTAGAAGATGAGCATCTTCTTCTGCATTTGATCACGATTCTTCTTGGCTGCCAAGAGGAGGATGTTTTAGAGCAAAATTTCTCAAATGCTACAAAACAAAAGATTAAAGCAGAAGTTATAGGTTTGCTAGAAGATACGGCTTCTAGCCATTTATTGGAGGTTATGATCGAGGTGGCACCAATGGCTTTGTATAACGAGTTACTTAATGTGATTTTCAAAGGTCCTTTGTTGGAAATATCATCTCATAAATGTGGGAATTTTGTTGTGCAAGCAATGATTTCTTGTGCAAGAACCAGAGAACAAGTCCATATGATCTGGGAAGAACTAGGTCAGTATATTTCCCGACTATTTGAGGAAGGGAAACCCGGAGTTGTTGCTTCTATATTGGCTGCTTGCCAACGACTACAAACCTGTGTTAATGAGTTTTGCCAAACACTGTCAGTTGCGGCTTGTCCAGAATCTGAGTTTCCCAGCTGTATTGTTCCTCATTTACTACACCTTGACAACTACTTCAGACATAAGTCCCACTGGAAGTGGCCCTCAGGAGATAAGATGCATGTATTAGGCTGCTTTATGTTGCAAAACATATTTAAAATTTCAAATTCCACAGTGAAACCATACATTGAGAGTATGACCTCAATGGAAGCTGATTACATATTAGAAACTGCAAAAGATGTTGGAGGTGGCCGTGTTCTTGAGGCATTTCTTTGTTCAGATGCTTTAACAAAGCAAAAACTCGAAGTTTTAACCAAATTGCAGGGTTATTTTGGAGAGCTTTCAATGCACCCTTCTGGTTCATTTATTGTTGAAAAGTGCTTTACTGCAAGCAATATGGCCATGAGAGAGACGATTGCAGCAGAGGTGCTGAATGTGCAGCCTGAGCTATTCAGGACAAAGCATGGCCCTTACTTGTTGAGGAAGCTAGATATTGAAGGGTATGGTAGAAACCCCAAAGAGTGGAAATCAAGGCAGGAATCAAGGGCGGCTGCCTATCAAGACTACGTAACCACATTTGGAGACAAGCCCCATGCTTTTTCCTTTACCGCACACGAGTCTTCTCAGAAAGCCTCCGATAAGAAAACTAAAAAACAGCAAGAAAAAATCGCCGAACATTATAATTTCAGCAGGGAAAATCCCTCAACTTCATTGCCATCCCCTCTGCCATATAAAAGACAAAGCTCTTCTCATTCCAATGCCGTCAAATTTCTATCGGCAAAGAGTTTCACAAGGAATAGCATGAGAGCTAAGCCGGCTTTTAAATCGAAGAAAAGGGAAGGCTCGCCGGTTTCCGAGCTTGTCAGTCTCGCTCGCAAGTCTAAGCTCAGCCAAGACGATGTCCATATGCTGTTTGATCCTAAAACAATAGGAGATAAATTACATGTCGTAATCCCTTTCATGAAGAAGCATAATAAGAGCTGATGTTTTTTTCCTCATTTTTAGTGTTCTTAAGCTTTTATTTGGCAGCCACTGCAGCAGAAGCAGAAGTAAATGCGTTCTTGTGTATCTGCTTATTTGTTTATTTGAGATTTTTAAGCTGAGGTTGTATTAGAATGTGCTTTTGAAATTTGTGAGCTTTGCTAGATTTATTAAATCTATGAAAGGAAATAAAAAAGATAAAGCCTTTTACTTTTT

Network for GWHGAAEX007115

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.640
SRP064423	SRR2545915	Juvenile tuber	19.280
SRP108465	SRR5643513	five period of Gastrodia elata	9.330
	SRR5643514	five period of Gastrodia elata	10.730
	SRR5643515	five period of Gastrodia elata	9.360
	SRR5643524	five period of Gastrodia elata	9.450
	SRR5643525	five period of Gastrodia elata	8.000
	SRR5643528	five period of Gastrodia elata	8.300
	SRR5643658	five period of Gastrodia elata	9.510
	SRR5643659	five period of Gastrodia elata	9.220
	SRR5643660	five period of Gastrodia elata	9.540
	SRR5643661	five period of Gastrodia elata	9.620
	SRR5643662	five period of Gastrodia elata	9.630
	SRR5643663	five period of Gastrodia elata	10.180
	SRR5643664	five period of Gastrodia elata	9.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.210
SRP279888	Gastro	Gastrodia elata tuber	12.83
	Juven	Juvenile tuber	13.01
	Mother_Gastro	Mother tuber of Gastrodia elata	9.56
	Mother_Juven	Mother tuber of Juvenile	8.06