Gene detail

Detail information of GWHGAAEX007116/evm.TU.scaffold_197.31

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	6.00E-124	Transcription factor, Myb superfamily
nr	gi\|743823140\|ref\|XP_010932454.1\|	0	PREDICTED: uncharacterized protein LOC105053113 [Elaeis guineensis]
Swissprot	tr\|Q9S7G7\|MB3R1_ARATH	2.00E-28	Myb-related protein 3R-1
trEMBL	tr\|M0TBT6\|M0TBT6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P31410_001}
TAIR	AT3G18100	6.00E-124	myb domain protein 4r1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000196	1418623	1470776	+

Transcript Sequence
>GWHTAAEX007116 TTCTATTGTTTTCTATATAATTTGAGGTATGCCCATACCAATTATAAAATAACAAAAACATAGGCTTGTTCGTTTTGTTAAATTCATAGGGTACTCGTGGAAACCCTCGCCGTCGTCTCACTCCACCAAGGAGAGTGCAAAAAACCTCGCTGGAAACCTAAGACCTCTATGCTCTCTTCATCGCCACAACGGCCTCCTTCGCCGGGCCGCCTATTCTCTGTGGATGGCCAGCACGATGACACCGCGGCCGCCTCTTCCGATGAGGACGAGGATACCCTGCGACGACTAATGCAGACATTTGGCTCCAAAAAGGGAGGTCTCAGCTACGAAAGAAATGGCGGCGATTGCGATTCTTGCTCTGACACCGACAGCAGCGCAAGCGACGACATCGCCTACCTCCAGCGGCTCCAGGAGCAGTTCGTTCCCCATTCCACTGGCTATCCCCACACCCCTCCTATCATGAAGCCTATGCGCTCTTTCCCATCTCTCGACACGGACGAAGAAGATGATTTTGAGACTCTCCGCGCTATTCAGAGGAGGTTCGCTCATTATGGGAGCGAAGTAACACCCAAAGATTTCTCAGCAGAAACCAGCGCATTTTCAGCTGGAAAATTTGGGCAAACCGCTCAGAGAAATAAAGAGAATCCAGAAGAGAATCATAGTCTTTCAGATCCTTTTGATGCACCCATGAGGACTAAAGCATTGCATGAAAATAATCCAGAGGAGAATCATAGTAACATTAATCAAAGGGATTCGTTCTCTGTGCGACCGCTCTTCTCTCCCAGGTTTTCTAAGTCTGTTCAGAACTTCGTCGATGCACTCAAGAAGAACAGGGCATGCCAGCGATTTATTAGAGAGAAGTTGATGGAAATTGAAGCAAAGATTGAAGTTAATAGAAAACTAAAAGACCACATCAAATGTTTTATGAACTTTCATGCTGCATATAAAAGAAAAGTTGGGCATAGTTTATGTCAAAAATGGGATCCACGTGTTCGGTTGATTTCTTTTCGAAAACAGAAATCAGTATGTACAATTAAGGAAAATTCTAAAACATGCTCTGCATTGTATTTTGCTCCAGCTGAAAACCTTCAAGTGTCAAATTATGAGATGGTAATGAGGAGATTCCCAGTCACACTTAGAAATAGACGATGGTCAGACAAAGAGAAGGACAAGCTTTTAAATGGAGTAAAGCAACAATGTCAAGAGATGCTGCTTTTGAACTCGATGAATCTTGGAAGTGATGTTGATGCTTTGGATGACTCCATTATAATGTCTACTTTTGATAGTGCCGACAAACAAGTAACAACAGAAAATTTAAGGCTTTTTATTCCTTTTGTCAACTGGGATCGTTTGGCTTGTATGTATCTTCCAAAACGCTCAGGTCCTTCGTGTGAATCAAGGTGGTTGAATCATGAAGATCCAACGATCAATTGCAAACCTTGGACATTATTAGAGGACAAAAAACTCCTGTTTACTGTCCAAGATAGAGGCATTTATAATTGGATTGACATAGCGTTGATTCTGGGAACAAATAGAACCCCATTTCAGTGCTTGGCACGATATCAGAGGAGTCTCAATCCTCATATTTTAAACAGAGAGTGGACTACTGAAGAAGATGCAAAATTGCACGCTTCTGTGAAATCCTATGGTGATAAAAATTGGCAGATTGTAGCTTCCTATTTGGACGGCCGTACTAGCAATCAGTGTTCTGTTAGATGGAGAAACACCCTTCTTCCTGAAAGGAAAAGGGTGGGAAGATGGTCTGTGAATGAAGACAAGCGCTTAAAAGTTTCGGTCATTCTTTTTGGAGCCAAAAATTGGAAAAACATCTCCCAGTTCATCCCAGGCAGGACTCAAAGCCAATGCAGAGAAAGATGGCTCAATTGTCTGGATCCATCCTTAAACCTGGAAAGATGGACTGGAGAAGAGGATGCAAAGCTTTTGGCTGCAATAGCAGAGCATGGGCATAGTTGGTCCAAAATTGCAGCATACATACCTGGACGTACTGATAATCAATGCAGAAGGAGGTGGAAAGTGTTACTTCCCCATGAAGTGTCTATGCTCAAAGTGGCTCAACAGTTAAAGAAAACAGTTCTTATTTCAAATTTTGTTGGTAGGGAGAGTGAGCGCCCTGCGATTGGTCCCAATGATTTTACACCAACTTTGAGTATTCCAGGGTCTGATATTAAAAATTATGGAGGAAAGAAAAGGTTGAGAAAGCAATCAAATCCAGGAATTAACAAGAATGGACCAAGAAACAAGCGAGCAAAAAAATATCATTGTAAATCAGAAAAAAATGGTGAAGAAATTTCCAGAAATGGCTCGATAAACTCTCTTGAAGTTGCTCACGAGAATGTGCCTCATGTACCTGTTTTACCATCTTCTGTTACTAAAGTTAAAAGAACAAGGAAAAGAACATTAAGAATTCAACATAAGGGGCTTAAATCTCAAGAAAGAGAGCAAATTGATGATATTATTGCATCAAATAACTTGGGTGAAGATCTTTTTATGGAATTACCTCTGGCCCAAGTGATGAAGCTTATCTCAAGAAAGGGAAACTCAGTTACTGAGGATAGAAATGCTAATTCATCGTTGGTGTCCCGCTTGGCTGATGGCTTTTGATTGAATGAACCTTCGCTGCTGCAAGCATTCTTTGGCCTTCCAGGCTTTCCAATGAGTTTCACAGTAACTCTCATGGCAGTATCAAATGAAAAGAAGAATTGGGCTTTATGCTGTCTGGTTCATAATATGAAGCTTTTTGACAATGAGAAATAAGGATTGGATTCTTTATCATGCTACTTATTGTGCATAATTCATTTGGCTACTAACAAAGCAACAAATCTTCATCAGTGAGCAATTCGAAGCGCTAAGGGAATTTTAGTGTTGGTTCTTTTCTGCACAAATATTATAATTCTGTATGTTTTTTTGAGAAATGTTATATCTTCACCATTTATATCAAATTTTTGATTAATGCTATTATAAATAAAGGAAATTATATACGAGTAGCAAAGGAAGCTACTTCGTAGCTAGTAGAGTAGTAGCCTGTACAGTATTATTTTAAATTTTTTACACATTTACATACTATATTTAATTAAATGTACACCAATAGACAAAATTCAACTTTACTTGCCCAAGATTTGCGGTATGATGTAGAAATTCCAATTTTTTATAAGCACTATAGAACGCCTAAACTTTATTTATAAGAGTTAGCATCTAAGTTTACTAAAATCTTAAATACTCTGACCCAATTTTGATATATAAAAGATTGGCATCTCAGGTCATTATAATCATCTTAGTCAATGAAATTCTCAATTTATTTAATAGTGATATAAGGCAAAAGTTATTATGTGTTAAACTTGATTTGAAAAAGGCTTTTGACAGTGTTCTTAGAAAATTAATTATGGACAGACTTCAAAAGATGAATTATCCTAGAACTTACATCAAATGGATTTTAGAGCATGCATCTCTAATGCTCATTTATGAGTAGTAAAATTTCTTTATACTGACATAATTGCACTAATGTCTCTAAGCTTGCATTGTGGAAATCTACACTAATGATACTCATTCAAATCCTTTGGGGAATATCTCCCGCTTCAAAAAGATGTTTCTTCAACTCATTAATATCAAAAAATCTCTCATGCTATTTTCTAATGGCAATGTCTGGTTTAAAGGCAAGGATTACATAACTTTCAAAGTTGCTCACAGGTTGATTCATACAATGATCCATTGGCTTATTGGGCTTAACTAGTTTGGCATAAAAAGAACAAACAAAGGTATTTGTGTTTTCCTTGGAGAGCAGTTTTTAAGGGATTTAAAATGGCTAATGTGTTAAAGGCAAGAGGAATTAATTGCACAGTTAATTGTGCTCTATGCAATCAGGCTAAGGAATCTCATGATCACTTGAATTTTTCATGTCCTTATAGTTATTATCTGTTCAAAAATATTATGCCAACTAGTGCATATTTTATACCTCCAATAAGTGCATTTGCAGTTATCTCTTATTATATTTGGGAATAAAGAAATAAGTGCATTTTTCAAACAAATTTAAACAGAGAACCAATTAAGTCTACGTTGCAAGAGGATGATCAAAGGAGTTATTCAATACTGGATTCCTACAAACATGAATTACAATGCTGATATCATTAGCTTTAAGAACTGGGAAAGTTCTTTCACACTTTAATTTGGGCATTGCTCCTTCCTAAAATGTTTCCTGTTGACAATTTGCTTCATTAGTGAAATTAATGCACTAACTATAGTGAGATTTAATGAATTACTATTCTTTGATGCATTTCAACTTATTGGCTGAATCTGGTTGGATCTTGTCTAGAGAGCTGTTAATGATTGCATTTGCTAGTTGCTGGCCGAATTCGTCTTTTTACGATGATTTATGGTGTTCAATTTGGTTTATGTGTTGCTGCTTTTCCAGTTAATTGTAGCTTTGCATTCATATTTAACTCTTAGGGAGAGTTTCGATTTATTTGATAGCTGTAGTGATAACATTTTTCAGGTTTATGATAAACTTTATTCTGCTGCATTCCGAGCCTGTTGAGTAGAATCTTTCTTTTTATGCAATCTAATATGACCCATATTTGTCTAAATGGATTTGTATCGGCATGCAACAAAGAGGTTTTATTTCTTTGGTTATGGCTCAGGCTAGTTTTGCTTCATTTTTATGCTGCATGCTGGTGTTGATACACTTCTGCTTGGTATTGTTAGTTTTTTGAATGAAGTTCTTAACAAATTATATGTTATTCACTATGGAAGAATGATACTTTTGTCATTGGCTGCCGACCTCATTTGGTACTTCAGGTTCCTGATGCGCTTGTGTTGCTTGGCTTATATTACTTTGAAGAGATTGGGAAGGATTACGATGAATTTTGGGGCCACATTTCCTGGTTGGAACGCGATATTGTAGATACTATTATGGACAAACTCCCTAGGGGGTCACTTAAATCCAGAGTCTCTCGTATGTTTTTTTAGTACTTTGCTTAGTTTCTCTTTTATTATAGTTTTTTGTTTGCTCTTTTTCTTGTTTAATTTTGATTGCAACATTGTGGCTTTTTGAGATTTAGTTAATATACTGTTCTAAGCCCTCATATTTTGTAAAAAAAAAAGTATATATATATACCACCAATTAGCAATCGGCAAACAATATATGATGCAG

Network for GWHGAAEX007116

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	477	520	1.50E-10
PF00249.30	Myb_DNA-binding	529	573	4.10E-12
PF00249.30	Myb_DNA-binding	582	625	3.00E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.450
SRP064423	SRR2545915	Juvenile tuber	3.880
SRP108465	SRR5643513	five period of Gastrodia elata	3.570
	SRR5643514	five period of Gastrodia elata	3.340
	SRR5643515	five period of Gastrodia elata	3.750
	SRR5643524	five period of Gastrodia elata	3.310
	SRR5643525	five period of Gastrodia elata	2.700
	SRR5643528	five period of Gastrodia elata	2.510
	SRR5643658	five period of Gastrodia elata	2.100
	SRR5643659	five period of Gastrodia elata	5.170
	SRR5643660	five period of Gastrodia elata	4.730
	SRR5643661	five period of Gastrodia elata	4.130
	SRR5643662	five period of Gastrodia elata	4.710
	SRR5643663	five period of Gastrodia elata	4.810
	SRR5643664	five period of Gastrodia elata	4.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.620
SRP279888	Gastro	Gastrodia elata tuber	9.23
	Juven	Juvenile tuber	6.92
	Mother_Gastro	Mother tuber of Gastrodia elata	6.02
	Mother_Juven	Mother tuber of Juvenile	5.23