Detail information of GWHGAAEX007120/evm.TU.scaffold_198.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG12941.00E-60Apurinic/apyrimidinic endonuclease and related enzymes
nrgi|743832777|ref|XP_010935073.1|5.80E-96PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Elaeis guineensis]
trEMBLtr|M0RQ46|M0RQ46_MUSAM2.00E-94Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P07160_001}
TAIRAT4G360501.00E-60endonuclease/exonuclease/phosphatase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020175424544+
Transcript Sequence

Network for GWHGAAEX007120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06839.11zf-GRF3513832.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10772APEX2 Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.390
SRR2545915Juvenile tuber13.610
SRP108465SRR5643513five period of Gastrodia elata7.680
SRR5643514five period of Gastrodia elata8.450
SRR5643515five period of Gastrodia elata6.320
SRR5643524five period of Gastrodia elata7.300
SRR5643525five period of Gastrodia elata6.650
SRR5643528five period of Gastrodia elata9.040
SRR5643658five period of Gastrodia elata7.540
SRR5643659five period of Gastrodia elata6.330
SRR5643660five period of Gastrodia elata6.080
SRR5643661five period of Gastrodia elata4.600
SRR5643662five period of Gastrodia elata4.650
SRR5643663five period of Gastrodia elata5.820
SRR5643664five period of Gastrodia elata4.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.870
SRR6049655Rhizomagastrodiae_C368-T10_good_111.410
SRR6049656Rhizomagastrodiae_C368-T07_good_114.010
SRR6049657Rhizomagastrodiae_C368-T07_good_121.700
SRR6049658Rhizomagastrodiae_C368-T04_good_125.790
SRR6049659Rhizomagastrodiae_C368-T04_good_134.280
SRR6049660Rhizomagastrodiae_C368-T01_good_119.850
SRR6049661Rhizomagastrodiae_C368-T04_good_123.510
SRR6049662Rhizomagastrodiae_C368-T01_good_115.100
SRR6049663Rhizomagastrodiae_C368-T01_good_117.150
SRR6049664Rhizomagastrodiae_C368-T10_good_111.170
SRR6049665Rhizomagastrodiae_C368-T10_good_111.170
SRP279888GastroGastrodia elata tuber 11.30
JuvenJuvenile tuber15.36
Mother_GastroMother tuber of Gastrodia elata 13.06
Mother_JuvenMother tuber of Juvenile 10.16