Detail information of GWHGAAEX007122/evm.TU.scaffold_198.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|257126300|ref|YP_003164414.1|5.00E-21cation diffusion facilitator family transporter [Leptotrichia buccalis C-1013-b]
KOGKOG14847.00E-151Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily)
nrgi|672112254|ref|XP_008804789.1|4.61E-176PREDICTED: metal tolerance protein C2 [Phoenix dactylifera]
Swissprottr|Q6ICY4|MTPC2_ARATH3.00E-164Metal tolerance protein C2
trEMBLtr|M0RQ69|M0RQ69_MUSAM5.00E-167Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P07390_001}
TAIRAT3G121007.00E-151Cation efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002016043088340+
Transcript Sequence

Network for GWHGAAEX007122

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01545.20Cation_efflux1183146.40E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0006812Biological Processcation transport
GO:0008324Molecular Functioncation transmembrane transporter activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.530
SRR2545915Juvenile tuber27.350
SRP108465SRR5643513five period of Gastrodia elata16.690
SRR5643514five period of Gastrodia elata18.030
SRR5643515five period of Gastrodia elata17.710
SRR5643524five period of Gastrodia elata19.290
SRR5643525five period of Gastrodia elata18.850
SRR5643528five period of Gastrodia elata16.010
SRR5643658five period of Gastrodia elata19.190
SRR5643659five period of Gastrodia elata18.190
SRR5643660five period of Gastrodia elata16.320
SRR5643661five period of Gastrodia elata17.370
SRR5643662five period of Gastrodia elata17.590
SRR5643663five period of Gastrodia elata16.730
SRR5643664five period of Gastrodia elata16.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.510
SRR6049655Rhizomagastrodiae_C368-T10_good_117.770
SRR6049656Rhizomagastrodiae_C368-T07_good_118.310
SRR6049657Rhizomagastrodiae_C368-T07_good_119.980
SRR6049658Rhizomagastrodiae_C368-T04_good_122.220
SRR6049659Rhizomagastrodiae_C368-T04_good_123.170
SRR6049660Rhizomagastrodiae_C368-T01_good_118.290
SRR6049661Rhizomagastrodiae_C368-T04_good_120.800
SRR6049662Rhizomagastrodiae_C368-T01_good_119.860
SRR6049663Rhizomagastrodiae_C368-T01_good_122.330
SRR6049664Rhizomagastrodiae_C368-T10_good_119.690
SRR6049665Rhizomagastrodiae_C368-T10_good_119.690
SRP279888GastroGastrodia elata tuber 13.46
JuvenJuvenile tuber14.51
Mother_GastroMother tuber of Gastrodia elata 15.78
Mother_JuvenMother tuber of Juvenile 16.87