Gene detail

Detail information of GWHGAAEX007128/evm.TU.scaffold_198.11

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1906	2.00E-164	DNA polymerase sigma
nr	gi\|743832478\|ref\|XP_010934990.1\|	0	PREDICTED: uncharacterized protein LOC105055002 [Elaeis guineensis]
trEMBL	tr\|M0SIB0\|M0SIB0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P27440_001}
TAIR	AT4G00060	2.00E-164	Nucleotidyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000201	261829	306049	-

Transcript Sequence
>GWHTAAEX007128 GGTGCTCCACTCCTTCCTTTCCGCTACCCTCCTCCGTCTTTTGCCAAACCCTAGCAATGGATTCCGAAACGCACCGACTCGTCCACTCCATCACTGCCCACCTCGCGCTCTACCATCCGCACATTTATACCCCTAAACATGGCTCCGCTCGGGCATCCATTCTCCGCTGGTTCTCGTCTCTCTCCCCCGCCCGTCGGCAAGCAGCTCTCACCGTTCTCGATTCCTCATTTATTCTCATGCTTCTTAAGATGCAGCACCATCTCCTCCTTCATGGCCACGCGCATTTTCTCATCCTCCCTGACGTTCCCTCCACCCCTTCAGACCCGACCGTCCCATCCCTATCGTTCCGCTCCTCCTGTGGCCTCATTTACCGCGCCGACGCCTCCAATTCATCCGTTCGGATCTTGTCTGATTCCCTTTTGTTCTTCTCCTCCGCCTCGTCTAGTGCCACACTAGCGGACGCATTATCGGTCTCCGAGTCCCTTGTTACTGATGTTGACAGCTTTGTGGGTGTCATGGATGGGGTCTCTGGTGGGGGATTCCTCTGCGATGAGGTAGATACGCCGGGTCTCACTGTGAAATGGATGGAGCTTCCATGGCTGAAAGGCATGGGGCACTACAGCTTTGAGGCATTTGTAACCAATCGGATTGAGGTTGCTCTGAGGCTGGCTTGGATTAGTTCTCAAGGGGGAAAAAAACCCAAGGACAAGAAGTTGAAGGAGTGGGCTGCAGAGGTTTCTGGAAAGGCTGCTAATGCCTTTTGGAGGATGAAGGGTTGTCTTGATTGGTGGGTTGGGTTGGATCCGGGTTTAAGGAGGGTGATCATTTCAGCTTTTTTTGGGAAGGCATCAAGGGCTCTGCTTGCAGGCCAATGAGATAATTAGGGAAGAAAATGCTTCTTTGAGCAATGAAGTTGGTTTGTTAAATGTTGAAAGAAAAATGAAATCACGCTATGATGGCTTGTCATCATGGAAAAAAGCTAAACAGAAGGCACTCTTCAGAAGTGATTCAGATTTTGGTTTCAACTTTTACCCTATTGCAACTTCTAGAGCTCCAAGTAATCTAGCAATCATTTTGAACAAGTTGGTAGTTATTCAAACCATATCCAAAGTACTTTTAGCATGGCTGTCTGGAGAAGTTGAAACTGAGAAACTATTCTTCGGATATTTGCATTCTGACTTTAGTGTTTATGATCATATATCAAGGAAATTGCAAAGTTTTCTCATGGTTTTTTATACTACTCTTACAAATCATGAACTTATGGAGGATGCAAAGCAAAGTTTTTTCCCCAAACAAGCCAAAGAAAAGTATTGTCTGGTACGCAGGAAAGGGAAAAGCAAATCCTGCTCTTCAAAAAAACTTAATGCTATGCCTAAGGCTAACAATACTACTATATCCCAACAATATTCTCAGGAAAAGTCAAATGCAAGGGTTTCAGAAGGTTGCAAAGAGTACAGTAGTAATAGAAAAAACAGAAGAAAAGGGACCAACAATAAAAACTCAAATGTAAAAAATATTGAAAAGCCTAAACATGTAGGCAATAAAGACAGCATTCTTCCTATTGCTCAAGAGAGAGAACTGAGAGGAACAATTGCTTTTGAGTGCACTTCAAATTCTCAGTCCGAATCTGTTGATATATCATGTGACAGCTTTTTGGTACCATCTATCTCTGAAATTTCTCATGAATATGCAATGATGGATCTAGCTCAATCAAGAAAATCCATCCACAAAAATCAGTCTTCTTCTAGTTTTGCCAATTGTAGACCTGCTATTGTTGAACAATGCAGTACTAGTTCTGGAAAAAGAACTGATGTGCTCACATATGTTTCCCATCTTAAAAGGAGTGATGAACGTCTCCAACCAACTTACAAGAATAGCAGCTATCTTAACAAACAGGCTAATCCTTGGATGGGATCTAGAAGCGGTTCTTCTATATGCAGCACCAATGAGATTGAAAATGTTGCAACTGATGGGAGATACAGAAATCTGATTACTAGTGATGCAACTGGCTTGGCATCAAAGTCTTTTATTTCAACGGAGTGTTTCCATGCAAGCACTGATGAAGTGAGCTCAGTAATACACAATGGTGGCAGTGAATGCCTTCCCTACAGTGGTGTGAATTCCATTGGAGTAACATCTAATGAATGGCCCAGCTTAACTCCCATTCATTTTCCATCTGTTAAGTCACGCCTCCTTCCAGCCACCGATAGATTACATTTAGATGTTGGTGTTAGATGGCCTTACAACACTCCTCAGTCCTTTATGCCATCGAAGGCTCTTGTAGGAAATTCATTTAATGAATTTGGACACAGTGGCATCATGCCTTTGACTTTTCCTATGAGTTATGACTGGCCTCTCATGATTAAAAATGGTAGCAGACTGAACCAAATCCACAACAAGGGTTATGAATCTGCCTATAATCACAGCAAGCCGCCATCTTTTTACTCAGGGATATCTTCCTGTGTTACTCATGGAGTACAAATAAATGTGCCATCTGGGGATAATGAAGTTAAGCATGCTGAGGATATTATTGATTTCTATGATATGAAAAATATGTCTGATTTGGTTGAAGATGAAAGCTATTGGTTATCTGAAGAGGAATGTGAACCTCATGCAAGGAGGGGAAGAGATTATAATAAATTTTTTGGTGGTGGTGTAATGTATTGGAATCCTGCTGAACTTGTTGGAAGTGGATTTTCACGTCCACCTTCTCACAGTTCAGAAGATAGCTCATGGGCTTGGCATGAGGCAGAACTTAATAGAACTATTGATGATATGCTTGGTTGCAAGAATGGGCTACCTACTTATAGTACAAATGGCATGTCATCGCCACCATCTTCAACATATTGTTCACCATTTGATCCTATGACAACTGGGCACCCTCCCTTGGGTTATTCAGTTGCTGGAAATGATGGGCCTAGTAATGTTGTACAGTCTGCATCAGGATCAGGTCTTTCTGATGAGAAAATTTCATCTTCTACCACTAGCTTGACAGCTGGTATTGAAGGGGTGAAAGGAGATCCACTTATGTATCCAATGCTACGTCCAATCATTATTCCAGGTATCTCAAGGAAGGGATCTCGATCAGACTTTAAGGTTGGTTTTGAGAATAAAAGCCCATGTTTACCTTCAACTAGGAGAGATACTCCGCGGATCAAGAGGCCTCCATCTCCTGTGGTTCTTTGTGTTCCTCGAGTGCCTCGGCCTCCTCCACCTTCTACTGGTGAATCAAGGAAACGAGGGTTCCCTGTTGTTAGATCTGGTAGCTCAAGTCCTAGGCATTGGGGTGCAAAAAATTGGTACCATGAAGAAAGCACTGTGGCAGACGCTCATTTTCGGTTGGATGGTGCTGAAGTTGTGTGGCCAACCTGGGTAAATAATAGCCTAGGGATGACTGCGGCAGCCCAATCTCTACAAGGATCTCTACTTCAGGATCGTCTGATAACAATTTCTCAACTTGCCATTGATCAAGAACATCCAGATGTTGCGATACCTCTTCGGCCACCTGATCTATTAAATGATGTTTGCAAGGGGTCACTATCGTTGATGCAGAATCTTCTTCACGAGGAAGTTGACTCTTTTTGCAAACAGGTTGCTGCTGAAAATTTGATTCGAAAGCCATTCATTAATTGGGCTGTCAAACGGGTCACACGATCTCTTCAGGTGCTCTGGCCTCGGTCTCGCACCAACATATTTGGTTCTAATGCCACTGGTTTAGCTCTTCCCTCTAGTGATGTAGATCTTGTAGTGTCCCTTCCTCCTGTAAGGAATTTGGAACCTATCAAAGAAGCTGGAATTCTTGAAGGACGCAATGGTATTAAGGAAACATGTCTGCAGCATGCTGCTAGATACCTCGGAAACCAAGAGTGGGTTAGAAATGACTCCCTTAAAACAATTGAAAACACAGCTATACCTGTGATCATGCTTGTCGCTGAAGTTCCTTGTGATCTAACTTTATCACATGGATGCGCTTCCATTGTGGATATACCTAAAGGCAAACCACTCAAAATATCTGGAGAAGATAACAGTGGTTTGCATCTAAATATGCCTAGTCCCAAAAATGAGTTTTCTTCAAATAATTCAATGATTAGAGAAGATGATTCTGCTGCTGGTGTGAAGTCAATTCGTTTGGATATTAGTTTCAAATCAGCATCTCACAAGGGGCTCCAAACTTCTGACCTGGTTAGAGAACTTACTCAACAGTTTCCTGCTTCTGTTCCGCTTGCTTTAGTGCTTAAAAAGTTTTTGGCAGATCGTAGCTTGGACCATTCTTACTCGGGAGGGTTAAGCTCATATTGTTTGGTTTTACTGATTACACGCTTCCTTCAGCACCAGCACCATTGTGGTTATTATATGAAACAAAACCTGGGCAGCCTTTTGATGGACTTCTTTTACTTCTTTGGCAATGTTTTTGATCCACGCCATATGCGAATTTCAATTCAAGGAAGTGGAGTTTATATGAAAAGGGAAAGAGGTCTCAGCATCGATCCAATCCATATTGATGATCCTTTGTTTCCAACCAACAATGTCGGACGGAATTGCTTTCGGATACATCAATGTATCAAGGCTTTTGCCGATGCGTACTCCACGCTGAAGGGCGAGCTAACTCTGATGCCTAATGAATGCGATCCATGTTCCACACTGTCGTTTAGTCTGCTCCAAAAGATTGTACCAAGCATTGTTGATGGCAAGGACTGAGCTTTCGCCTTTGGGGACTGTAGTATTACTATGGTATTCGGAGTGTATTATATTCATCCAACTTTTTTCATGTATACAGTATAAAGCTTCTCATATTTGTTAGCTACCTGCAGTACTCATGTCTCGTCTAAGATTTTTACGAGGAGATTATAATTGCATGATGGAGCTACATATGCTGTTCAAGTAATGTCCTACTAGCTTTTTTACGGGAATTTGCCTTATTTTCGAGTTTATAGAATCATCGGCCGCATTTTGGGACAAAAATTCTGTGTTTATTGTGGTCTGTAGACCCAGTCTTGTAAGTTTAGATGGAATTGGAAGATTAAAGCAGTGAACTAAATGAAAACCAAAGAGAAGCCATCTTTGGAATGTTCTGTTTATGTAAAAAGCCATTACAAGGAATGCTTGGGTGTTGTTTTTGAAAAGGCTAAAGCTGCAGAATCATGAAGTCATTTATGATCTTTATTCTTATCAAGGAAAGAAGCATCTCTTACAAGAGGCAGGAACTCTGATGGTATCTTTCTAATCAGCCTATGTGATGAGTAGTTTCTTGACTAAGAATAATCAAATATTAATCAGTATGTGGGGTTAAATTTCTGGGCAAAGAGCTTTTCAAACATTTTTTGATATGAAATTATATGTATATGACAACACTCATATTGTGCAACGGCTGTAATATTTGAATTAAAAATTATAGGTTGCTCTAATCCTATTTTGATATTATATTTGTGCATGAATGTAAGCCATAATATATGCTTACCGATGACAGTTCTGTGCCGTTAGATTCTGCTCACACAATTTATTTGAAATATAATTAAAATACTAGAAAGTTGAG

Network for GWHGAAEX007128

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01909.22	NTP_transf_2	900	948	5.60E-07
PF03828.18	PAP_assoc	1142	1194	1.80E-07

Protein Sequence

>GWHPAAEX007128
MKSRYDGLSSWKKAKQKALFRSDSDFGFNFYPIATSRAPSNLAIILNKLVVIQTISKVLLAWLSGEVETEKLFFGYLHSDFSVYDHISRKLQSFLMVFYTTLTNHELMEDAKQSFFPKQAKEKYCLVRRKGKSKSCSSKKLNAMPKANNTTISQQYSQEKSNARVSEGCKEYSSNRKNRRKGTNNKNSNVKNIEKPKHVGNKDSILPIAQERELRGTIAFECTSNSQSESVDISCDSFLVPSISEISHEYAMMDLAQSRKSIHKNQSSSSFANCRPAIVEQCSTSSGKRTDVLTYVSHLKRSDERLQPTYKNSSYLNKQANPWMGSRSGSSICSTNEIENVATDGRYRNLITSDATGLASKSFISTECFHASTDEVSSVIHNGGSECLPYSGVNSIGVTSNEWPSLTPIHFPSVKSRLLPATDRLHLDVGVRWPYNTPQSFMPSKALVGNSFNEFGHSGIMPLTFPMSYDWPLMIKNGSRLNQIHNKGYESAYNHSKPPSFYSGISSCVTHGVQINVPSGDNEVKHAEDIIDFYDMKNMSDLVEDESYWLSEEECEPHARRGRDYNKFFGGGVMYWNPAELVGSGFSRPPSHSSEDSSWAWHEAELNRTIDDMLGCKNGLPTYSTNGMSSPPSSTYCSPFDPMTTGHPPLGYSVAGNDGPSNVVQSASGSGLSDEKISSSTTSLTAGIEGVKGDPLMYPMLRPIIIPGISRKGSRSDFKVGFENKSPCLPSTRRDTPRIKRPPSPVVLCVPRVPRPPPPSTGESRKRGFPVVRSGSSSPRHWGAKNWYHEESTVADAHFRLDGAEVVWPTWVNNSLGMTAAAQSLQGSLLQDRLITISQLAIDQEHPDVAIPLRPPDLLNDVCKGSLSLMQNLLHEEVDSFCKQVAAENLIRKPFINWAVKRVTRSLQVLWPRSRTNIFGSNATGLALPSSDVDLVVSLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLGNQEWVRNDSLKTIENTAIPVIMLVAEVPCDLTLSHGCASIVDIPKGKPLKISGEDNSGLHLNMPSPKNEFSSNNSMIREDDSAAGVKSIRLDISFKSASHKGLQTSDLVRELTQQFPASVPLALVLKKFLADRSLDHSYSGGLSSYCLVLLITRFLQHQHHCGYYMKQNLGSLLMDFFYFFGNVFDPRHMRISIQGSGVYMKRERGLSIDPIHIDDPLFPTNNVGRNCFRIHQCIKAFADAYSTLKGELTLMPNECDPCSTLSFSLLQKIVPSIVDGKD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016779	Molecular Function	nucleotidyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.130
SRP064423	SRR2545915	Juvenile tuber	20.850
SRP108465	SRR5643513	five period of Gastrodia elata	12.040
	SRR5643514	five period of Gastrodia elata	12.830
	SRR5643515	five period of Gastrodia elata	12.670
	SRR5643524	five period of Gastrodia elata	12.060
	SRR5643525	five period of Gastrodia elata	15.420
	SRR5643528	five period of Gastrodia elata	12.600
	SRR5643658	five period of Gastrodia elata	12.370
	SRR5643659	five period of Gastrodia elata	19.390
	SRR5643660	five period of Gastrodia elata	22.670
	SRR5643661	five period of Gastrodia elata	16.210
	SRR5643662	five period of Gastrodia elata	16.820
	SRR5643663	five period of Gastrodia elata	20.140
	SRR5643664	five period of Gastrodia elata	22.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.690
SRP279888	Gastro	Gastrodia elata tuber	22.94
	Juven	Juvenile tuber	26.22
	Mother_Gastro	Mother tuber of Gastrodia elata	22.63
	Mother_Juven	Mother tuber of Juvenile	29.82