Detail information of GWHGAAEX007130/evm.TU.scaffold_198.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|156937645|ref|YP_001435441.1|3.00E-11DNA-directed RNA polymerase subunit M [Ignicoccus hospitalis KIN4/I]
KOGKOG26915.00E-73RNA polymerase II subunit 9
nrgi|672115892|ref|XP_008781098.1|2.09E-76PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Phoenix dactylifera]
Swissprottr|Q6NLH0|RPB9A_ARATH2.00E-73DNA-directed RNA polymerases II, IV and V subunit 9A
trEMBLtr|M0REP7|M0REP7_MUSAM1.00E-76DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586, ECO:0000256|RuleBase:RU004351}
TAIRAT3G169805.00E-73RNA polymerases M/15 Kd subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000201397150416899-
Transcript Sequence

Network for GWHGAAEX007130

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02150.15RNA_POL_M_15KD4404.70E-14
PF01096.17TFIIS_C751131.70E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03017RPB9, POLR2I RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006379Biological ProcessmRNA cleavage
GO:0006351Biological Processtranscription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.220
SRR2545915Juvenile tuber5.980
SRP108465SRR5643513five period of Gastrodia elata16.900
SRR5643514five period of Gastrodia elata19.060
SRR5643515five period of Gastrodia elata15.100
SRR5643524five period of Gastrodia elata16.560
SRR5643525five period of Gastrodia elata16.000
SRR5643528five period of Gastrodia elata12.400
SRR5643658five period of Gastrodia elata12.300
SRR5643659five period of Gastrodia elata7.590
SRR5643660five period of Gastrodia elata12.810
SRR5643661five period of Gastrodia elata11.460
SRR5643662five period of Gastrodia elata9.780
SRR5643663five period of Gastrodia elata9.220
SRR5643664five period of Gastrodia elata9.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.530
SRR6049655Rhizomagastrodiae_C368-T10_good_112.170
SRR6049656Rhizomagastrodiae_C368-T07_good_110.600
SRR6049657Rhizomagastrodiae_C368-T07_good_16.320
SRR6049658Rhizomagastrodiae_C368-T04_good_18.250
SRR6049659Rhizomagastrodiae_C368-T04_good_17.910
SRR6049660Rhizomagastrodiae_C368-T01_good_18.980
SRR6049661Rhizomagastrodiae_C368-T04_good_19.380
SRR6049662Rhizomagastrodiae_C368-T01_good_112.130
SRR6049663Rhizomagastrodiae_C368-T01_good_110.230
SRR6049664Rhizomagastrodiae_C368-T10_good_116.980
SRR6049665Rhizomagastrodiae_C368-T10_good_116.980
SRP279888GastroGastrodia elata tuber 12.57
JuvenJuvenile tuber14.34
Mother_GastroMother tuber of Gastrodia elata 15.09
Mother_JuvenMother tuber of Juvenile 15.67