Detail information of GWHGAAEX007133/evm.TU.scaffold_198.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521468231|ref|YP_008155740.1| | 1.00E-11 | hypothetical protein SCE1572_46965 [Sorangium cellulosum So0157-2] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|743872708|ref|XP_010906622.1| | 0 | PREDICTED: monocopper oxidase-like protein SKU5 [Elaeis guineensis] |
| Swissprot | tr|Q9SU40|SKU5_ARATH | 0 | Monocopper oxidase-like protein SKU5 (Precursor) |
| trEMBL | tr|M0RP63|M0RP63_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P03830_001} |
| TAIR | AT4G12420 | 0 | Cupredoxin superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000201 | 485515 | 491848 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007133
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 34 | 148 | 4.70E-39 |
| PF00394.21 | Cu-oxidase | 161 | 313 | 1.30E-42 |
| PF07731.13 | Cu-oxidase_2 | 422 | 534 | 2.50E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.300 |
| SRR2545915 | Juvenile tuber | 5.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.760 |
| SRR5643514 | five period of Gastrodia elata | 18.000 | |
| SRR5643515 | five period of Gastrodia elata | 15.720 | |
| SRR5643524 | five period of Gastrodia elata | 17.590 | |
| SRR5643525 | five period of Gastrodia elata | 2.320 | |
| SRR5643528 | five period of Gastrodia elata | 2.860 | |
| SRR5643658 | five period of Gastrodia elata | 2.960 | |
| SRR5643659 | five period of Gastrodia elata | 5.710 | |
| SRR5643660 | five period of Gastrodia elata | 5.420 | |
| SRR5643661 | five period of Gastrodia elata | 3.630 | |
| SRR5643662 | five period of Gastrodia elata | 3.550 | |
| SRR5643663 | five period of Gastrodia elata | 5.290 | |
| SRR5643664 | five period of Gastrodia elata | 2.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.41 |
| Juven | Juvenile tuber | 1.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.06 | |
| Mother_Juven | Mother tuber of Juvenile | 0.70 |