Gene detail

Detail information of GWHGAAEX007142/evm.TU.scaffold_198.27

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743885349\|ref\|XP_010909899.1\|	4.75E-116	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105035882 [Elaeis guineensis]
trEMBL	tr\|B9HLR1\|B9HLR1_POPTR	7.00E-78	Cyclin-related family protein {ECO:0000313\|EMBL:EEE90043.2}
TAIR	AT1G70620	3.00E-30	cyclin-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000201	801622	831101	+

Transcript Sequence
>GWHTAAEX007142 ATGGACGGTTTTCCCCGTCACCATCCGCCACAGCACGTCGGAGGAGCCTTCTGGCACCCATCTTCGTCTTCCCCTTCGCCTCCAGCTGCCTACCATCCGCCCCCTCCCCCACCGCACCTCTCCCAGAACCTGGCGTTTCCTCCCCCGCCCCCTTCTTACCACCATCAGCCGACCTATCCGAATCAAATGCCTATCGCTCCGCCTCCGCCGCATCAGATACCGCAGCCGTGGTTTCACCCCCCGCAACAGCCTTCGCAGCCTGCCATGGCGGTGCCTCCTCTCTCTGCTCCACTGCCAAATTACCCTCAAACTTACCACCCACAACCTGGCCTCCCGCCCCCTTATCCTCCGCCTCAGCATCACTATCCTCCTCATCCTCATCCCATGGCTTCACCTTCTCCTGCCTATCCTCTCCCATCCGCCCAGACATGGGGAAACCCATCTTGGTCTCATCATCAATTATGGGAGTATCCAGATCAAAACATTCAGTGCGGCAGTGAGGAGGATTGGGCTGCAAAGGCGAGAGCATGGGCGGCTACTGATTCAGTAACTGAAATCCATCATGCGCGTCCACAGTTTACATCATTTGGGAGGATGGATGAGCAGGCACATGCCTATAATGGTTATTTACCGAAAGTCGGTGCTCTCGCTGCTGATAACCAACCACAATTGCCTCCTCATTCGAGTAACAGCTATGGACGGGCATTATGCAATGAAGATGAACCAGCGTCCAGGGAAATTAGCCAGTTGAGTTCACCACCTAGAAACTATTTTTCAAGTTCATTCATATATGAGCAGGAGGTACCTTATACTTATTCTTCCTCACAAGGTAACAGAGAAACTGTGGATCATAGAGAGATGCCACAAGAGCATATTTATCCTCGGTTCACAGCCCCTGTCCAACTTTCTTCAGTGGAAGAGCCTCGCTTGTTCCCTGGAAACCAACTTGCTAAACCACCATCTGATTCTAGTGATCAGCCTCTTGATTTCCATCCAAGGTCTACATTTGCTTCCGATCAGCATAACCAATTTAGCTATAGTCTTGCTAGTTCTGCAGCAAATGAAGGAGTGATGGATCAAAATTTGACTATGGTTCCTGTTCATACTTGGAGTTCAGCTACGGTTCCTGTTGTTTCCTTTCCTACGATTCCCTTGGCTCCATCTGGAACACTGTTTGATTCTTCGTTTGCATCACAACCTACGCTTACTGTTCATCCGGCTCCTGTTTTTGGGGGGGTTGCTACTCCAAGCTTTCAGCCTCCTGTGTCCCCTATTAGGGCACCATTTGGTATTGGTGTTGGGACGTCTCTTCATTCTGTTGAATTTTCTGCAGATGGGAATAGCTCTTTCAATCTTCCTGAACGACCAAAAAAGGCAGCAGTTCCTAGTTGGCTGAGAGAGGAAATAATTAAGAAGAAATCTGCTATTGCAACTTCCAATTTAAGGCATCCTGAAACAGTTGAAATGGAAGATGCTGATACGCCTTGTAAAAATACTGATCAAACTGACAAAAAGAGCATAGATACAAGGAGGTCTACCGAGGATGATGATGATGATGAGGATGAAGTAGAAGCAGCAAGATCAGCAGCTATCAATCAAGAAATAAAGCGTGTTCTGACTGAAGTTCTTTTGAAGGTCACAGATGAACTTTTTGATGAAATTGCAACCAAAGTTCTTGATGAAGATGAACCAACTACAGATGTTGTTGAGATTACCAGCCTTGGTAACTTTAAATCAGCTCTTCCTCTGTCTACTCCTACTCCTAAGACCTCTTCTAAAGTTTTAGTTCCTATGAGAACTGCTAGTAAGAGTGTTAATGATGCTATTGAAAACTCCAGCCATAACTCTGCTGGTGGAGATTTATTGGGTCTAGCCAACTATGGTTCAGATGTTTCGGATGATGATTATGATGTTGGAAAACAAGGAGATGCGTATAGGAAGCTAGATACTACTGTTTCTCGTCATCTACAAGCACCTGCTAGATCTCATGAGCATACTTCCGATGATTCTGAGGTAGGAAAGAAATTACTGAATGCTGATGATAATAATGATGCACAGAAGGAAAAAATGATATTTCTTCCAGATTTGAGTGAAAGGAAAAGGGTTGGGAAATTTCATGCAAACGTCCCAGGAGTTTCTGAACTCTCTGAGAAGACCAGTTCCATTAGCACTGATACGGCTGGAGAATTCCTACAAGATGGTGTAAAGTACCTTAAATCAAGTGGCATTGTTAGTACTGATGGTGGAAGAAGGCACGAACCTGTGAGTGGTGACAAAACTACTAGTAAAGAATGTCAGGATGGAGAAGTCAACATCTTATCCTCCAGCACTAGCAGAAAACTGGAAAAAAGCCTGAATAGCAAGGAAGTAGCGGTTGGTTCTCACAATAAGGATAAGGAAATCAGCAAACATGCAGAAAAACAAAAGGAAAAAATGGATAATTGCAGTAAAATTAATGAGTGGGATGGTGACAACAATGCTAAACAAGGGGCCATCGAGAGAGAAACTCATTCTAAAAGTAGTTCTAGGAGTGAGGGCATAAATGATGGTAGAAAGGAGAAATTGAAAGATAAAGGAGAGTATAATAATGGTTATGAAAAGAGGAGTGAAGGCAAAAGAGGCAAAAAGGAGGACTATAAGAGACCTGGGAAGGAAGATCGATCAGAATTAGCGAGGGAAACATTGAAGCGTCAAGTTAGCTCTAGATCCCCTGCAAGTATAAGAAGATATGCAAAGGAATATTCAGCAAGTTGTCGTGGCAGTGCATCAAGCGAGGAATCGTCCGATACTTCACGAAAGAGGAAGTTGAAATCCAGAGAAACTAGCTTGTCAACATCGCCGAGGTCTACAAAAAGGTAA

Network for GWHGAAEX007142

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15996.4	PNISR	486	573	1.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.140
SRP064423	SRR2545915	Juvenile tuber	46.680
SRP108465	SRR5643513	five period of Gastrodia elata	23.450
	SRR5643514	five period of Gastrodia elata	27.310
	SRR5643515	five period of Gastrodia elata	27.070
	SRR5643524	five period of Gastrodia elata	25.710
	SRR5643525	five period of Gastrodia elata	23.370
	SRR5643528	five period of Gastrodia elata	16.810
	SRR5643658	five period of Gastrodia elata	22.720
	SRR5643659	five period of Gastrodia elata	38.970
	SRR5643660	five period of Gastrodia elata	46.020
	SRR5643661	five period of Gastrodia elata	37.940
	SRR5643662	five period of Gastrodia elata	32.830
	SRR5643663	five period of Gastrodia elata	43.290
	SRR5643664	five period of Gastrodia elata	40.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.490
SRP279888	Gastro	Gastrodia elata tuber	48.85
	Juven	Juvenile tuber	43.47
	Mother_Gastro	Mother tuber of Gastrodia elata	31.57
	Mother_Juven	Mother tuber of Juvenile	33.45