Detail information of GWHGAAEX007147/evm.TU.scaffold_198.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21905.00E-102PolyC-binding proteins alphaCP-1 and related KH domain proteins
nrgi|743757525|ref|XP_010922375.1|2.03E-135PREDICTED: KH domain-containing protein At4g18375-like [Elaeis guineensis]
Swissprottr|P58223|Y4837_ARATH4.00E-40KH domain-containing protein At4g18375
trEMBLtr|W9QPS3|W9QPS3_9ROSA3.00E-118KH domain-containing protein {ECO:0000313|EMBL:EXB31947.1}
TAIRAT5G152705.00E-102RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000201866948875709+
Transcript Sequence

Network for GWHGAAEX007147

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00013.28KH_146983.70E-08
PF00013.28KH_11432109.20E-09
PF00013.28KH_12573066.30E-07
PF00013.28KH_13434081.90E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms64.350
SRR2545915Juvenile tuber41.190
SRP108465SRR5643513five period of Gastrodia elata28.130
SRR5643514five period of Gastrodia elata23.580
SRR5643515five period of Gastrodia elata27.490
SRR5643524five period of Gastrodia elata22.840
SRR5643525five period of Gastrodia elata16.850
SRR5643528five period of Gastrodia elata15.050
SRR5643658five period of Gastrodia elata16.860
SRR5643659five period of Gastrodia elata20.570
SRR5643660five period of Gastrodia elata25.050
SRR5643661five period of Gastrodia elata22.810
SRR5643662five period of Gastrodia elata24.980
SRR5643663five period of Gastrodia elata23.190
SRR5643664five period of Gastrodia elata26.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.120
SRR6049655Rhizomagastrodiae_C368-T10_good_130.190
SRR6049656Rhizomagastrodiae_C368-T07_good_127.530
SRR6049657Rhizomagastrodiae_C368-T07_good_135.600
SRR6049658Rhizomagastrodiae_C368-T04_good_140.740
SRR6049659Rhizomagastrodiae_C368-T04_good_148.660
SRR6049660Rhizomagastrodiae_C368-T01_good_131.800
SRR6049661Rhizomagastrodiae_C368-T04_good_135.500
SRR6049662Rhizomagastrodiae_C368-T01_good_123.120
SRR6049663Rhizomagastrodiae_C368-T01_good_127.570
SRR6049664Rhizomagastrodiae_C368-T10_good_124.140
SRR6049665Rhizomagastrodiae_C368-T10_good_124.140
SRP279888GastroGastrodia elata tuber 25.39
JuvenJuvenile tuber25.53
Mother_GastroMother tuber of Gastrodia elata 49.32
Mother_JuvenMother tuber of Juvenile 37.25