Gene detail

Detail information of GWHGAAEX007149/evm.TU.scaffold_198.35

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743876865\|ref\|XP_010907689.1\|	8.43E-64	PREDICTED: uncharacterized protein LOC105034295 isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0RR93\|M0RR93_MUSAM	1.00E-42	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P11130_001}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000201	961838	970697	+

Transcript Sequence
>GWHTAAEX007149 TAGCCTATTAAGGGTTCAAATTATTTTTATATACTTTTCAAGTCAAACTTGAATATATTTTTTGAACAAGCTGCCATTCACTCAAAACCAACTTGAAAGAGTTCGTAATATCATTCATAGATAGACTTGAAACTCTGGAGTAGATTTCAAACCAATTTAAAATTTTTGCTTTTTGTTGAGTTTTTTGAGCTAAATCAGCAGCTTCTTTGTTGCAGTCTTTCACTCGGATATAAACTAGTCTCATCATCTTTGTTTTTTTTAATATGAATATAGACCATATGGTTTGGAAAGTTTTATAGTATTCTTTTACTCAAAAAATAGCCTTTGGCAGAAGAATACTATTTATCCAAGCCCTATTGAATATCAAGCTACATTATGAAGCCTGCCTTACCTGATACACAAAGACACGTAGGAAAAAGTTGTTTTTCCCAGTGAAACTTTAACAGGATCATTTGAAAGATTTGCATATTCTTTGATGTCAGTTTCTTTTTGGATGAAAAATTTGCAAATTCTTTGAAGTTAGTTGCTTATAAGATGCCTGAGGTCTCGAAGGAAATCGATGGCAATGACAAGCTACAGGTAAACGATACTACTTCAAACTTTGTTCACAGAGTCTCATCGAATATTGAAACAGCTGAAGTTTTTGGTTTTTCTATTAGTGATCTTGGTGGTATGCCTATAAAATCACCAGTTGCTGTTGATATTCATCCTGTTTCAAAAGCCCCTCTACATGGTTCCTGGTGCTACGATGGAACTAATAAAGAACACCAGAAATTTTCAAATCTAGCAAAATATGGCCAGAATTTATCTATTGATGCTGTTTCAAGCCATGATAGCAAAATTTCTCACTGTTCAACAGAAGTTGGGTTTCTGTCTTCCAATGCGAAGTCTTCAAATGAAAAACCATCATTTGAATTCTTTGTTGTATCTGATGAGGGTATTAATCTTTATGTTGATTTGAACTCAAGTCCATCAGAGTGGATTACAAGTTTGAAAGATGAAGTTTGCATTGATCAGAGATCACAGCTTCAAAGCTTGGGCTCTCTCTACAAGTCTGCTAGATGCTTTTCAGTTTCTGGTCAGCATGTGAAAGCTTCTACGTCTGAACGCAATGGGCCAAACCTTCAGAATAATGTGGTTGAAACCAACACAGGATGTACAAATTCTTCCTTTTGCTCCATTGTTAGTGAGAATTGCCAATCTGAGGTTCTTCCACTACATGCTCCCGTTACTTCTTCTGGATCTTTTATAATTACAGGAAGCCACAATCCAGTGGAAACATCGGAAAATTTGGGAGAAACTAAAGAGCTTTCTTCTCCTTGTATAGCTCATTCTAATTCTGGACACTCGAAGATGGTCGATGATATATTTTTCTCTCAGGGGCAAACCTTTACACATCAGGATTCTAGCGATGCTTCTCTTAGAGCAGTGCAGAGCTGTTCTTCTGTGCATGATTTGTCAGATAATGCGAATGAAAATCATTGCACAGGTGTGACAACAAATCTTGATGAGACTACCCAATGCCTTAGCCTAAAGTTCCAAAAAAAAGATTCTGACAACGCCGAAGATACTACAGAGAACATTTCAGCTACAAGTTTTTGCGAGAAAAGCAATCTTACAGAACTAGATGAAAATTTAAATAATTCGAAGATCACTGACTTTGATATTGTTGAAGATCAGATCACTATGGACCATGATCACTTGCAAATAAATTCTGAATGTAACAACGTGGAAAGCTTATGCGATGATGGCCAACCATCTGATGTTAATCAACTGGGAAATTCTCTTGCAGACGGTCCTGCCTCGACATATGAGAATTTGAGAAAAAGCAATCGGCTGAAGGAGAAAGAAAAATCTTTGGAACAGAATGCCTTGGACAAAGTCTCCAAAAGATCCCGCCGTTCGGATTTCAATGAAGGGAATCAAATCAAGAGGCGTGAATCTGTTGGTAACAATAAAAATGGAACTCTGCCAAATACAAAGTCTTCGATGAAGAAAAATGCAAATGATCCCACTGTTTTTCGCCGGCGATCTTCTAGGCTCCTTTCAAAGGTTACATAAACATTAATCAAGCTTTTTAACTCTTTATTTCCTGTTCACGATATATGCTCATGATTAAAATTTGAGATTATATTACCGTTAAACAATCTTCTTACCAACTTACTGAGCAGTTAATGATTTTGTTTGATATGCTTGAATATCATCAAAATATGATAGCTGAGACAGTTCAGTAGAAAACATGAGCAATGGCAAAACTCAAGGATCTCTTCTTAGCACATTATTATTACTCAACCACAAGTGAGAGTAGGCATCATATATGTAAATATATATGTTCTTGGTATAATGAGAGGGCTATCCTTTAGAGTATGTTTTGTAAGTTAGTTGAAAAATGTATTCAATTTCATCTTTGATAATTCCCCCTCCCTATTGTCATGAGATGATGGGGGGGGGTGTCAGTTCTATGGGTTTTGTGTATTGTTTGAGGAAAGTTAAGAGGATGTGTTCTGAAGGTTTTTCGATTAATAGCAAATAGGGATAATTTGGGTGAGATTTTGGTAGATATAGAGAAATGGTTCACACGATATATTGCTAGTAAACTGATATAGGTCTCTTGATTTTGATGATGACAAAGTAACGGTATTATAGCATAGTGATTAGAGTTCAAAATTTGTTATCACAAGTCTTGGATTCAAATCTCACTAGCCACACAGTTACTTCATATTTGAAGACATCTTATTTCAAAAAAAAAAAAAAATTAGTGTTTCGGTATGTAACACGTTTAATGGAGTAAAAGTGGGAAGATATTTTATGTGAAAACTTGAGATGAAATTTAATGAAAGAATTCAATGCTTAGAATTTATGAAATTTAATCCAGGGGTTTAGATTAATCAAACAAAATTCTTTTATTTGTGTTAAAAAACATTATAAAATTTTAAAAAAATTTAAATCAATCGGGATTCCAGATTTTGTGCTGCATTATAGAGATCATAAATATTGGTTTTATCATTAATGATTCAGAAAAATTATCATTATATTTTTCTTGATATTCGGATAATTTGGGCCTGAGTTTACTTGCTGTGGGCTTTTAGATTATGTGAGTTGGGTGGCCTTTGTTGAGGTTAAGGCCCACCTGTGTCTGTTATTTTGATTTTATTGGGGCTTGAATCAGTGATGCTGTCCTCATCCAATGTAATATGATGTTAATCAAATTAATATCATCTTCAATTTATTTTTATGCAATTTCAATCTATTTTTATGCAATTTTATTTTCTTCCTTGCTTGTATTTATTATATTTTAGGTTAAGTTCGTATATTTTTTAACATTTAATTTTATGTTTTATAAAATTGCCATAAGAATCCCTATAATTGCATTGAAAC

Network for GWHGAAEX007149

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000287	Molecular Function	magnesium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.670
SRP064423	SRR2545915	Juvenile tuber	10.200
SRP108465	SRR5643513	five period of Gastrodia elata	6.830
	SRR5643514	five period of Gastrodia elata	8.050
	SRR5643515	five period of Gastrodia elata	7.860
	SRR5643524	five period of Gastrodia elata	8.920
	SRR5643525	five period of Gastrodia elata	5.220
	SRR5643528	five period of Gastrodia elata	5.810
	SRR5643658	five period of Gastrodia elata	6.290
	SRR5643659	five period of Gastrodia elata	6.130
	SRR5643660	five period of Gastrodia elata	6.500
	SRR5643661	five period of Gastrodia elata	6.250
	SRR5643662	five period of Gastrodia elata	4.350
	SRR5643663	five period of Gastrodia elata	4.070
	SRR5643664	five period of Gastrodia elata	4.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.480
SRP279888	Gastro	Gastrodia elata tuber	7.40
	Juven	Juvenile tuber	5.67
	Mother_Gastro	Mother tuber of Gastrodia elata	8.74
	Mother_Juven	Mother tuber of Juvenile	5.55