Detail information of GWHGAAEX007150/evm.TU.scaffold_198.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0674 | 5.00E-158 | Calreticulin |
| nr | gi|695073290|ref|XP_009383806.1| | 0 | PREDICTED: calreticulin-3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O04153|CALR3_ARATH | 0 | Calreticulin-3 (Precursor) |
| trEMBL | tr|M0RSC8|M0RSC8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P14980_001} |
| TAIR | AT1G08450 | 5.00E-158 | calreticulin 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000201 | 973804 | 988067 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007150
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00262.17 | Calreticulin | 18 | 212 | 1.00E-51 |
| PF00262.17 | Calreticulin | 213 | 286 | 2.50E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08057 | CALR | Protein processing in endoplasmic reticulum | map04141 |
| Phagosome | map04145 | ||
| Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0051082 | Molecular Function | unfolded protein binding |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005783 | Cellular Component | endoplasmic reticulum |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 90.280 |
| SRR2545915 | Juvenile tuber | 119.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 53.560 |
| SRR5643514 | five period of Gastrodia elata | 54.090 | |
| SRR5643515 | five period of Gastrodia elata | 49.530 | |
| SRR5643524 | five period of Gastrodia elata | 55.950 | |
| SRR5643525 | five period of Gastrodia elata | 71.050 | |
| SRR5643528 | five period of Gastrodia elata | 69.910 | |
| SRR5643658 | five period of Gastrodia elata | 78.490 | |
| SRR5643659 | five period of Gastrodia elata | 45.200 | |
| SRR5643660 | five period of Gastrodia elata | 54.180 | |
| SRR5643661 | five period of Gastrodia elata | 50.650 | |
| SRR5643662 | five period of Gastrodia elata | 42.580 | |
| SRR5643663 | five period of Gastrodia elata | 47.240 | |
| SRR5643664 | five period of Gastrodia elata | 47.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 67.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 62.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 65.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 79.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 70.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 87.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 74.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 72.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 60.32 |
| Juven | Juvenile tuber | 59.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.29 | |
| Mother_Juven | Mother tuber of Juvenile | 44.65 |