Detail information of GWHGAAEX007153/evm.TU.scaffold_198.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672171917|ref|XP_008806037.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g15280 [Phoenix dactylifera] |
| Swissprot | tr|Q9LXF4|PP384_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g15280 |
| trEMBL | tr|A0A096URC2|A0A096URC2_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_4DL_70B4B65BB.2} |
| TAIR | AT5G15280 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000201 | 1028515 | 1032099 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007153
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 272 | 293 | 1.3 |
| PF13041.5 | PPR_2 | 368 | 416 | 2.10E-10 |
| PF01535.19 | PPR | 649 | 674 | 0.006 |
| PF01535.19 | PPR | 801 | 826 | 0.019 |
| PF13041.5 | PPR_2 | 901 | 950 | 9.90E-08 |
| PF01535.19 | PPR | 1011 | 1038 | 0.95 |
| PF01535.19 | PPR | 1045 | 1074 | 0.01 |
| PF01535.19 | PPR | 1083 | 1107 | 0.63 |
| PF13041.5 | PPR_2 | 1115 | 1147 | 1.00E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 101.550 |
| SRR2545915 | Juvenile tuber | 86.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.660 |
| SRR5643514 | five period of Gastrodia elata | 8.840 | |
| SRR5643515 | five period of Gastrodia elata | 7.480 | |
| SRR5643524 | five period of Gastrodia elata | 8.410 | |
| SRR5643525 | five period of Gastrodia elata | 9.750 | |
| SRR5643528 | five period of Gastrodia elata | 6.920 | |
| SRR5643658 | five period of Gastrodia elata | 10.780 | |
| SRR5643659 | five period of Gastrodia elata | 11.560 | |
| SRR5643660 | five period of Gastrodia elata | 14.460 | |
| SRR5643661 | five period of Gastrodia elata | 9.800 | |
| SRR5643662 | five period of Gastrodia elata | 12.340 | |
| SRR5643663 | five period of Gastrodia elata | 12.880 | |
| SRR5643664 | five period of Gastrodia elata | 13.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.80 |
| Juven | Juvenile tuber | 10.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.48 | |
| Mother_Juven | Mother tuber of Juvenile | 6.59 |