Detail information of GWHGAAEX007156/evm.TU.scaffold_198.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695046920|ref|XP_009411316.1|3.13E-164PREDICTED: APO protein 2, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprottr|Q8W4A5|APO2_ARATH7.00E-139APO protein 2, chloroplastic (Precursor)
trEMBLtr|M0TL76|M0TL76_MUSAM1.00E-164Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P27400_001}
TAIRAT5G579303.00E-138Arabidopsis thaliana protein of unknown function (DUF794)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020110394371046883-
Transcript Sequence

Network for GWHGAAEX007156

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05634.10APO_RNA-bind31524.70E-70
PF05634.10APO_RNA-bind1943051.20E-26
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms116.560
SRR2545915Juvenile tuber20.550
SRP108465SRR5643513five period of Gastrodia elata20.030
SRR5643514five period of Gastrodia elata20.480
SRR5643515five period of Gastrodia elata24.180
SRR5643524five period of Gastrodia elata20.690
SRR5643525five period of Gastrodia elata26.160
SRR5643528five period of Gastrodia elata19.860
SRR5643658five period of Gastrodia elata24.550
SRR5643659five period of Gastrodia elata29.100
SRR5643660five period of Gastrodia elata28.500
SRR5643661five period of Gastrodia elata29.730
SRR5643662five period of Gastrodia elata34.560
SRR5643663five period of Gastrodia elata29.980
SRR5643664five period of Gastrodia elata26.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.580
SRR6049655Rhizomagastrodiae_C368-T10_good_117.200
SRR6049656Rhizomagastrodiae_C368-T07_good_120.510
SRR6049657Rhizomagastrodiae_C368-T07_good_118.880
SRR6049658Rhizomagastrodiae_C368-T04_good_123.480
SRR6049659Rhizomagastrodiae_C368-T04_good_124.730
SRR6049660Rhizomagastrodiae_C368-T01_good_121.930
SRR6049661Rhizomagastrodiae_C368-T04_good_121.120
SRR6049662Rhizomagastrodiae_C368-T01_good_119.840
SRR6049663Rhizomagastrodiae_C368-T01_good_122.470
SRR6049664Rhizomagastrodiae_C368-T10_good_122.090
SRR6049665Rhizomagastrodiae_C368-T10_good_122.090
SRP279888GastroGastrodia elata tuber 22.35
JuvenJuvenile tuber19.95
Mother_GastroMother tuber of Gastrodia elata 33.80
Mother_JuvenMother tuber of Juvenile 20.90