Detail information of GWHGAAEX007158/evm.TU.scaffold_198.45


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|402771503|ref|YP_006591040.1|3.00E-129protein RecA (Recombinase A) [Methylocystis sp. SC2]
KOGKOG14333.00E-167DNA repair protein RAD51/RHP55
nrgi|719982454|ref|XP_010250454.1|0PREDICTED: DNA repair protein recA homolog 3, mitochondrial [Nelumbo nucifera]
Swissprottr|Q9ZUP2|RECA3_ARATH4.00E-171DNA repair protein recA homolog 3, mitochondrial (Precursor)
trEMBLtr|B9HDY6|B9HDY6_POPTR0RecA family protein {ECO:0000313|EMBL:EEE91807.1}
TAIRAT2G194903.00E-167recA DNA recombination family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020110664861083791+
Transcript Sequence

Network for GWHGAAEX007158

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00154.20RecA593214.30E-118
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03553recA Homologous recombination map03440

Gene Ontology

GO term OntologyName
GO:0006259Biological ProcessDNA metabolic process
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0008094Molecular FunctionDNA-dependent ATPase activity
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.150
SRR2545915Juvenile tuber24.220
SRP108465SRR5643513five period of Gastrodia elata19.410
SRR5643514five period of Gastrodia elata17.250
SRR5643515five period of Gastrodia elata16.400
SRR5643524five period of Gastrodia elata14.440
SRR5643525five period of Gastrodia elata10.670
SRR5643528five period of Gastrodia elata7.210
SRR5643658five period of Gastrodia elata4.150
SRR5643659five period of Gastrodia elata22.200
SRR5643660five period of Gastrodia elata24.460
SRR5643661five period of Gastrodia elata19.610
SRR5643662five period of Gastrodia elata18.330
SRR5643663five period of Gastrodia elata19.150
SRR5643664five period of Gastrodia elata22.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.710
SRR6049655Rhizomagastrodiae_C368-T10_good_127.120
SRR6049656Rhizomagastrodiae_C368-T07_good_125.250
SRR6049657Rhizomagastrodiae_C368-T07_good_122.190
SRR6049658Rhizomagastrodiae_C368-T04_good_120.130
SRR6049659Rhizomagastrodiae_C368-T04_good_116.190
SRR6049660Rhizomagastrodiae_C368-T01_good_123.230
SRR6049661Rhizomagastrodiae_C368-T04_good_121.380
SRR6049662Rhizomagastrodiae_C368-T01_good_132.810
SRR6049663Rhizomagastrodiae_C368-T01_good_127.560
SRR6049664Rhizomagastrodiae_C368-T10_good_126.240
SRR6049665Rhizomagastrodiae_C368-T10_good_126.240
SRP279888GastroGastrodia elata tuber 36.68
JuvenJuvenile tuber25.48
Mother_GastroMother tuber of Gastrodia elata 12.89
Mother_JuvenMother tuber of Juvenile 14.69