Gene detail

Detail information of GWHGAAEX007159/evm.TU.scaffold_198.46

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|379010853\|ref\|YP_005268665.1\|	1.00E-103	ribonuclease J [Acetobacterium woodii DSM 1030]
KOG	KOG1137	0	mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit)
nr	gi\|672183072\|ref\|XP_008811801.1\|	0	PREDICTED: uncharacterized protein LOC103722876 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8GUU3\|CPS3B_ARATH	6.00E-07	Cleavage and polyadenylation specificity factor subunit 3-II
trEMBL	tr\|B9RAI2\|B9RAI2_RICCO	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF51809.1}
TAIR	AT5G63420	0	RNA-metabolising metallo-beta-lactamase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000201	1085828	1146115	-

Transcript Sequence
>GWHTAAEX007159 TGGGAACGAAATGGCAACCAAAGCCGCTTCTCAACCAAAGATTTTCTTTTTCCCGCGAATGGTCAGTAGATTCTAGGGTTCTGACTCGCTAAGCAGAGCGCGCTCTCTCTCTTCCCTTGATTGCACTAAGTCGCACAACCGAACAGGCGCTCGAGCACGCTGCTAGCGTTTATGCATTCATTCACATTCTACTTTCAATCCCTTGTGCAAACGCAAAGTATGGCTTCGCTGAGCATATTCCATACCCTCCACGACTTTCGTCTCCCAAAGCTGCCTAAGTTTCAAAGAATCTTCATCTCGTACGCGGGCTCTGTTAGACCTCGTACGCGGACTCAAGGTGCGCAAGGATATATATCACCTTATAAAAGATCTAGAACGGATGCAATGGGAAAAAACATGGAAGATTCTGTTCAACACAAATTTGAACAGTTTTACGAAGGATTTAATGGTCCGCCTATACGTGTGCTTCCTATAGGTGGCCTTGGGGAAGTTGGAATGAACTGCATGCTAGTTGGAAACTACGATCGTTATATTTTAATAGATGCAGGGGTTATGTTTCCAAATGATGACGAGTTGGGTGTTCAGAAAATTACACCTGATACTGAATTCATCAAAAGGTGGAGCCAAAAAATTGAAGCAGTTGTTATAACTCATGGGCATGAGGACCACATTGGTGCGTTACCATGGGTAATTCCAGCTTTAGATTCTCGAACTCCAATTTATGCTTCATCGTTTACAATGGAGCTCATCGAGAAGCGATTGACAGAGTATGAAATTTTTATTCCTTCAAGGCTGAAGGTATTTGAGTGTAGAAATAAATTTCTGGCTGGGCCATTTGAAGTGGAGCCACTCCGAGTAACTCACTCTATCCCAGATTGCTGTGGTTTGGTTCTCCGGTGCAAAGATGGTACAATTTTTCATACTGGTGACTGGAAGATTGATGAATCTCCATTAGATGGGAAAATTTTTGATCGTGAAGCATTGGAGGAGCTTTCTAAAGAAGGAGTGACTTTAATGATGAGCGACTCGACTAATGTTCTTGTACCTGGAAGAACTACAAGCGAGGCTGTTGTTGCAGAATCTTTGTTAAGGCACATTTCTTCTGCTAAAGGAAGAGTTATTACTACACAGTTTGCTTCTAATGTACATCGTATTGGTAGTATAAAAGCTGCTGCTGATATAACTGGAAGAAAGTTGGTATTTGTTGGAATGTCCTTGAGGACTTACTTAGATGCTGCTTTTCGAGATGGAAAGGCTCCAATGGATCCTTCAACTTTAGTGAAAGTGGAGGATATTGATGACTATCCTCCCAATAATTTATTAATTGTCACAACCGGCTCTCAAGCAGAACCGCAAGCTGCTTTAAATTTAGCATCTTTTGGAGGCAGTCATTCACTTAAACTCACCAAGGAAGATGTGATTTTATATTCAGCTAAGGTTGTTCCTGGAAATGAAACTCGTGTTATGAAGATGTTCAACCGCATAGCAGAACTTGGATCTACTATTGTGATGGGTAAAAGTGAACTTCTACATACATCTGGGCATGGCTACCATGACGAGTTGGAGGAAGTTCTCAGAATTGTAAGGCCTCAACATTTTGTTCCTATCCATGGGGAGCTTTTATTTCTTAAAGAACATGAATTAGTTGGAAAGTCGGCTGGCATCAGGCACACTGCTGTAATAAAGAATGGGGAGATGCTTGGAGTTTCACATCTAAGAAACGGAAAAGTTCTATCTAATGGTTTTGCTTTGCTAGGAAAGGAAAAGTTACAGTTGATGTATAGTGATGGTGACAAAGCATTTGGAACATCCACAGAACTTTGTATTGAGGAGAGGTTAAGGATTGCAGTTGATGGGATAATAATTGTCTGCATGGAAATTTTACGCCCAGAGTGCATAAACGGGTCCTCGCATGCATGCCTAAAAAAAAAAATACGAATCAGCACTCGATGTTTGTGGCTCGACAAAGGCAATTTATTGGATGCCCTATACAAAGCTGCTCACACCACACTATCGAGTTGCCCTGTAAACTGTCCGTTGACTCACATGGAGAGGATCGTAGCCGAAGGCCTGAGGAAAGTCGTTAGAAAATATTGCAATCGAAGGCCTGAAGTCATCGTAATTGCGGTCGAGAACACCATCGGAGTTCTCTCTGAAGAGATCCGGGCAAGAATTGCTGGAAAAACTTCAAATGGTCTCCTGAGGATGGATGCTTCCAACTCTCTTGCAGATGATGATGATGATTTTGACTTTGACGGATCGGATGATGAGCCTTCTCTTTGTTCGGAGTTGGGAGATGATTTGGGAGTTGAAAATGCATCCGCAGCAGAACGTTTGGAAGAATCTGTGAAACAATCAGATGCAAACAAGACTCAGCGTGCTAATACTGAGAAGAGGAATAGATGGAAGCCTGAAGAGATTAGAAGGCTAATCAAAGAACGTGGCGATTTAAACAGCAGATTCCTGATCGCTAAGGGAAGAAGAATGGCCCTGTGGGACGAAGTGTCGTCGGGTTTGTTAAGCCAACACGGAATAACACGCACCTCAGCACAGTGCAAGTCTCTGTGGTCTTCACTGATTCTAAAATATGAGGAAAGTATAAATGATGAAAATCTTAGACAAAGTTGGCCGTACTTTAATGCCGTTGACAAGATATTGTCGGCAGCGGTGGTTCCGCCTCAAGAGACGTAACAGATCATATTCAAAGCTTTATTGTTTATTTATTTTTGGGCTGTTGTGTCTTATTTTTTATTTTGTTTGGCAGTTTATTATGAACTTTTAGCATAGTCGATTCAGTTCTGGATCCTTCAAAACAATTTGTTCGGATTAGAGAAAAGATTTGGTTGTGTTTAATAGTAAAGTCTAGCAGTTGATTATCTGCAAGAACAAATTGCAATTTTTTATTCATAAATCCTACTATTTTTGTTCCCTTTCTCTCTATTTCTATGCATTTTGCCTTGTTTAGGATGCATTCGACTGTTAGAGGTGTACTTCAAGTTAAGCATTCTGTATAATTATTTTTTATTTTATATATTTGTTCAACC

Network for GWHGAAEX007159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12706.6	Lactamase_B_2	119	255	6.70E-11
PF07521.11	RMMBL	453	482	2.10E-06
PF13837.5	Myb_DNA-bind_4	742	828	6.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.920
SRP064423	SRR2545915	Juvenile tuber	4.790
SRP108465	SRR5643513	five period of Gastrodia elata	4.270
	SRR5643514	five period of Gastrodia elata	4.220
	SRR5643515	five period of Gastrodia elata	5.160
	SRR5643524	five period of Gastrodia elata	4.710
	SRR5643525	five period of Gastrodia elata	2.810
	SRR5643528	five period of Gastrodia elata	2.280
	SRR5643658	five period of Gastrodia elata	2.580
	SRR5643659	five period of Gastrodia elata	4.350
	SRR5643660	five period of Gastrodia elata	4.400
	SRR5643661	five period of Gastrodia elata	4.710
	SRR5643662	five period of Gastrodia elata	4.780
	SRR5643663	five period of Gastrodia elata	4.080
	SRR5643664	five period of Gastrodia elata	4.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.520
SRP279888	Gastro	Gastrodia elata tuber	5.52
	Juven	Juvenile tuber	5.56
	Mother_Gastro	Mother tuber of Gastrodia elata	5.75
	Mother_Juven	Mother tuber of Juvenile	6.52