Detail information of GWHGAAEX007161/evm.TU.scaffold_198.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41970FOG: PPR repeat
nrgi|695012473|ref|XP_009392997.1|0PREDICTED: pentatricopeptide repeat-containing protein At3g49730-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FH87|PP447_ARATH0Putative pentatricopeptide repeat-containing protein At5g65820
trEMBLtr|M0SHU7|M0SHU7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P25810_001}
TAIRAT5G658200Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020111820281183842-
Transcript Sequence

Network for GWHGAAEX007161

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12854.6PPR_11782071.90E-06
PF13812.5PPR_32102573.80E-06
PF13041.5PPR_22793285.20E-19
PF13041.5PPR_23814281.10E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.440
SRR2545915Juvenile tuber3.550
SRP108465SRR5643513five period of Gastrodia elata7.430
SRR5643514five period of Gastrodia elata7.320
SRR5643515five period of Gastrodia elata8.160
SRR5643524five period of Gastrodia elata7.590
SRR5643525five period of Gastrodia elata9.850
SRR5643528five period of Gastrodia elata6.870
SRR5643658five period of Gastrodia elata7.880
SRR5643659five period of Gastrodia elata8.850
SRR5643660five period of Gastrodia elata10.260
SRR5643661five period of Gastrodia elata12.210
SRR5643662five period of Gastrodia elata10.630
SRR5643663five period of Gastrodia elata10.100
SRR5643664five period of Gastrodia elata10.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.310
SRR6049655Rhizomagastrodiae_C368-T10_good_18.640
SRR6049656Rhizomagastrodiae_C368-T07_good_16.040
SRR6049657Rhizomagastrodiae_C368-T07_good_17.800
SRR6049658Rhizomagastrodiae_C368-T04_good_19.730
SRR6049659Rhizomagastrodiae_C368-T04_good_18.200
SRR6049660Rhizomagastrodiae_C368-T01_good_18.920
SRR6049661Rhizomagastrodiae_C368-T04_good_18.110
SRR6049662Rhizomagastrodiae_C368-T01_good_19.480
SRR6049663Rhizomagastrodiae_C368-T01_good_17.840
SRR6049664Rhizomagastrodiae_C368-T10_good_17.510
SRR6049665Rhizomagastrodiae_C368-T10_good_17.510
SRP279888GastroGastrodia elata tuber 9.24
JuvenJuvenile tuber15.12
Mother_GastroMother tuber of Gastrodia elata 7.32
Mother_JuvenMother tuber of Juvenile 12.50